RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1145574", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1145574 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13042362 13042362 PRJNA1145574_P_NODE_2591_length_508_cov_1.818391_g2409_i0 PRJNA1145574 2591 508 1.818391 9.23742628 Bacteriovorax stolpii 960 Bacteria Bacteria 917 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g2409 i0 99.213 245.354330708661 508 4 100 0 1 508 1661521 1661014 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 124640 917 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
16335729 16335729 PRJNA1145574_P_NODE_4133_length_408_cov_3.898507_g3949_i0 PRJNA1145574 4133 408 3.898507 15.90590856 Bacteriovorax 146784 Bacteria Bacteria 647 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g3949 i0 94.651 64.2549019607843 430 1 100 1 1 408 1662027 1661598 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 26216 647 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
18884877 18884877 PRJNA1145574_P_NODE_4755_length_384_cov_3.295820_g4571_i0 PRJNA1145574 4755 384 3.29582 12.655948800000001 Bacteriovorax 146784 Bacteria Bacteria 710 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g4571 i0 100 195.690104166667 384 0 100 0 1 384 1662388 1662771 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 75145 710 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;