RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1145574", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1145574 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27943960 27943960 PRJNA1145574_P_NODE_9025_length_286_cov_1.408451_g8841_i0 PRJNA1145574 9025 286 1.408451 4.02816986 Pseudomonadati 3379134 Bacteria Bacteria 74.7 3.56e-13   NR RJR18537.1 2026770 g8841 i0 70.5 1.47902097902098 44 13 46.2 0 249 118 366 409 RJR18537.1 MAG: DUF4215 domain-containing protein [Nitrospiraceae bacterium] diamond 423 74.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
31998787 31998787 PRJNA1145574_P_NODE_9038_length_286_cov_1.126761_g8854_i0 PRJNA1145574 9038 286 1.126761 3.22253646 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 44.7 0.0129   NR NIA11552.1 2026770 g8854 i0 52.8 1.13286713286713 36 17 37.8 0 114 221 158 193 NIA11552.1 alanine--tRNA ligase [Nitrospiraceae bacterium] diamond 324 44.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;