RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1145574", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1145574 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3583748 3583748 PRJNA1145574_P_NODE_3103_length_463_cov_0.976923_g2919_i0 PRJNA1145574 3103 463 0.976923 4.52315349 Mollicutes 31969 Bacteria Bacteria 749 0   NTclustered gi|12698865|gb|AF332748.1| 2110 g2919 i0 96.112 184.049676025918 463 10 100 3 1 463 1423 969 Mycoplasma agalactiae strain L9 16S ribosomal RNA gene, partial sequence blastn 85215 749 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis agalactiae
4861352 4861352 PRJNA1145574_P_NODE_14284_length_244_cov_0.906433_g14100_i0 PRJNA1145574 14284 244 0.906433 2.21169652 Mycoplasmoidales 2790996 Bacteria Bacteria 363 8.949999999999999e-96   NTclustered gi|1563789200|emb|LR214962.1| 2115 g14100 i0 93.443 9 244 16 100 0 1 244 1207239 1207482 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 8 blastn 2196 363 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
12511981 12511981 PRJNA1145574_P_NODE_6750_length_331_cov_2.116279_g6566_i0 PRJNA1145574 6750 331 2.116279 7.00488349 Mycoplasmopsis 2767358 Bacteria Bacteria 612 1.14e-170   NTclustered gi|2111402438|gb|CP068733.1| 28903 g6566 i0 100 183.14501510574 331 0 100 0 1 331 723741 723411 Mycoplasmopsis bovis strain J81 chromosome, complete genome blastn 60621 612 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis
20690167 20690167 PRJNA1145574_P_NODE_3577_length_434_cov_1.811634_g3393_i0 PRJNA1145574 3577 434 1.811634 7.86249156 Mycoplasma corogypsi 2106 Bacteria Bacteria 54.7 0.012   NTclustered gi|2860285583|gb|CP174163.1| 2106 g3393 i0 100 0.0668202764976959 29 0 7 0 294 322 335177 335149 Mycoplasma corogypsi strain BV1 chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma corogypsi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;