RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1145574", tax_clade = "ac1 cluster" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ac1 cluster · 2 ✖

bioproject 1

  • PRJNA1145574 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27438988 27438988 PRJNA1145574_P_NODE_14243_length_244_cov_0.912281_g14059_i0 PRJNA1145574 14243 244 0.912281 2.22596564 Bacteria 2 Bacteria Bacteria 162 1.96e-48   NR KRO30988.1 1655568 g14059 i0 98.8 1.9672131147541 80 1 98.4 0 242 3 79 158 KRO30988.1 MAG: ubiquinone biosynthesis methyltransferase UbiE [Actinobacteria bacterium BACL2 MAG-120802-bin41] diamond 480 162 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120802-bin41
27943959 27943959 PRJNA1145574_P_NODE_13765_length_245_cov_0.906977_g13581_i0 PRJNA1145574 13765 245 0.906977 2.22209365 Bacteria 2 Bacteria Bacteria 166 3.36e-50   NR KRO30986.1 1655568 g13581 i0 97.5 22.7755102040816 81 2 99.2 0 1 243 63 143 KRO30986.1 MAG: NADH dehydrogenase [Actinobacteria bacterium BACL2 MAG-120802-bin41] diamond 5580 166 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120802-bin41

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;