RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1145574", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1145574 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31271297 31271297 PRJNA1145574_P_NODE_12895_length_248_cov_0.891429_g12711_i0 PRJNA1145574 12895 248 0.891429 2.21074392 Planctomycetota bacterium 2026780 Bacteria Bacteria 107 6.92e-25   NR HLX62955.1 2026780 g12711 i0 64.2 0.979838709677419 81 29 98 0 2 244 25 105 HLX62955.1 hypothetical protein [Planctomycetota bacterium] diamond 243 107 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32378555 32378555 PRJNA1145574_P_NODE_12219_length_250_cov_0.881356_g12035_i0 PRJNA1145574 12219 250 0.881356 2.20339 Planctomycetota bacterium 2026780 Bacteria Bacteria 134 3.5499999999999998e-34   NR MBU6384446.1 2026780 g12035 i0 97.1 0.84 70 2 84 0 211 2 1 70 MBU6384446.1 hypothetical protein [Planctomycetota bacterium] diamond 210 134 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32725768 32725768 PRJNA1145574_P_NODE_13920_length_245_cov_0.906977_g13736_i0 PRJNA1145574 13920 245 0.906977 2.22209365 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 150 4.04e-40   NR MCE2884755.1 2026779 g13736 i0 97.5 1.98367346938776 81 2 99.2 0 3 245 192 272 MCE2884755.1 DUF3488 and transglutaminase-like domain-containing protein [Planctomycetaceae bacterium] diamond 486 150 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;