RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1145276" and tax_clade = "FCB group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1145276 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5391631 5391631 PRJNA1145276_P_NODE_19225_length_242_cov_0.911243_g19168_i0 PRJNA1145276 19225 242 0.911243 2.20520806 Hymenobacter nivis 1850093 Bacteria Bacteria 54.7 0.006   NTclustered gi|1391209682|gb|CP029145.1| 1850093 g19168 i0 100 0.119834710743802 29 0 12 0 12 40 3566112 3566084 Hymenobacter nivis strain NBRC 111535 chromosome, complete genome blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter nivis
6666340 6666340 PRJNA1145276_P_NODE_3106_length_552_cov_1.196242_g3049_i0 PRJNA1145276 3106 552 1.196242 6.60325584 Chitinophagaceae bacterium DXS 3051226 Bacteria Bacteria 870 0   NTclustered gi|2524614756|gb|CP128386.1| 3051226 g3049 i0 94.991 322.248188405797 559 21 100 5 1 552 6304733 6305291 Chitinophagaceae bacterium DXS chromosome blastn 177881 870 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae   Chitinophagaceae bacterium DXS
11767095 11767095 PRJNA1145276_P_NODE_3050_length_556_cov_2.231884_g2993_i0 PRJNA1145276 3050 556 2.231884 12.40927504 Sediminibacterium sp. KACHI17 1751071 Bacteria Bacteria 822 0   NTclustered gi|2690291631|dbj|AP029612.1| 1751071 g2993 i0 93.369 255.214028776978 558 34 100 3 1 556 2979174 2978618 Sediminibacterium sp. KACHI17 DNA, complete genome blastn 141899 822 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. KACHI17
26785878 26785878 PRJNA1145276_P_NODE_15461_length_253_cov_1.355556_g15404_i0 PRJNA1145276 15461 253 1.355556 3.42955668 Myroides odoratimimus 76832 Bacteria Bacteria 51.2 1.69e-6   NR WP_286394671.1 76832 g15404 i0 55 0.474308300395257 40 18 47.4 0 4 123 12 51 WP_286394671.1 hypothetical protein [Myroides odoratimimus] diamond 120 51.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus
29596451 29596451 PRJNA1145276_P_NODE_11850_length_295_cov_1.594595_g11793_i0 PRJNA1145276 11850 295 1.594595 4.70405525 Myroides odoratimimus 76832 Bacteria Bacteria 60.1 8.56e-10   NR WP_286394671.1 76832 g11793 i0 82.4 0.345762711864407 34 6 34.6 0 3 104 15 48 WP_286394671.1 hypothetical protein [Myroides odoratimimus] diamond 102 60.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Myroides Myroides odoratimimus
31334379 31334379 PRJNA1145276_P_NODE_1796_length_713_cov_1.131250_g1744_i0 PRJNA1145276 1796 713 1.13125 8.0658125 Porphyromonas gingivalis F 837 Bacteria Bacteria 53.5 6.57e-6   NR ERJ68952.1 1227271 g1744 i0 82.1 0.11781206171108 28 5 11.8 0 255 172 1 28 ERJ68952.1 hypothetical protein HMPREF1555_00132 [Porphyromonas gingivalis F0570] diamond 84 53.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;