RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1144090", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1144090 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28112667 28112667 PRJNA1144090_P_NODE_70265_length_302_cov_1.235808_g69730_i0 PRJNA1144090 70265 302 1.235808 3.73214016 Synergistaceae bacterium 2053624 Bacteria Bacteria 45.8 0.00555   NR MDR1622846.1 2053624 g69730 i0 53.3 1.40066225165563 45 21 44.7 0 10 144 219 263 MDR1622846.1 ankyrin repeat domain-containing protein [Synergistaceae bacterium] diamond 423 45.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
31271182 31271182 PRJNA1144090_P_NODE_117535_length_238_cov_2.557576_g117000_i0 PRJNA1144090 117535 238 2.557576 6.08703088 Synergistaceae bacterium 2053624 Bacteria Bacteria 45.4 0.00379   NR MDR3279392.1 2053624 g117000 i0 40 0.630252100840336 50 30 63 0 8 157 174 223 MDR3279392.1 3-dehydroquinate synthase [Synergistaceae bacterium] diamond 150 45.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;