RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where bioproject = "PRJNA1144090", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 22 ✖

tax_kingdom 1

  • Pseudomonadati · 22 ✖

bioproject 1

  • PRJNA1144090 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7940061 7940061 PRJNA1144090_P_NODE_121327_length_210_cov_4.744526_g120792_i0 PRJNA1144090 121327 210 4.744526 9.9635046 Desulfocapsa sulfexigens 65555 Bacteria Bacteria 52.8 0.018   NTclustered gi|451904998|gb|CP003985.1| 1167006 g120792 i0 100 0.133333333333333 28 0 13 0 3 30 935159 935132 Desulfocapsa sulfexigens DSM 10523, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens
10490460 10490460 PRJNA1144090_P_NODE_10589_length_866_cov_2.674653_g10156_i0 PRJNA1144090 10589 866 2.674653 23.16249498 Desulfovibrio desulfuricans 876 Bacteria Bacteria 58.4 0.002   NTclustered gi|2884834435|gb|CP176628.1| 876 g10156 i0 97.059 0.0785219399538106 34 1 5 0 180 213 748355 748322 Desulfovibrio desulfuricans strain SFAD67 chromosome, complete genome blastn 68 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
16864767 16864767 PRJNA1144090_P_NODE_71714_length_298_cov_2.800000_g71179_i0 PRJNA1144090 71714 298 2.8 8.344 Desulfosarcina ovata 83564 Bacteria Bacteria 67.6 9.89e-7   NTclustered gi|1774952549|dbj|AP021879.1| 2752305 g71179 i0 86.667 0.929530201342282 60 8 20 0 176 235 2114025 2114084 Desulfosarcina ovata subsp. ovata oXyS1 DNA, complete genome blastn 277 67.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina Desulfosarcina ovata
18139410 18139410 PRJNA1144090_P_NODE_73735_length_294_cov_2.045249_g73200_i0 PRJNA1144090 73735 294 2.045249 6.01303206 root 1 Root_unresolved Root_unresolved 127 3.9699999999999996e-32   NR WP_273025747.1 1741 g73200 i0 64.3 27.9795918367347 98 35 100 0 1 294 74 171 WP_273025747.1 chaperonin GroEL [Thermodesulfobacterium commune] diamond 8226 128 0.9921875 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune
25259388 25259388 PRJNA1144090_P_NODE_67600_length_308_cov_1.310638_g67065_i0 PRJNA1144090 67600 308 1.310638 4.03676504 Pseudomonadati 3379134 Bacteria Bacteria 75.5 1.08e-13   NR MDJ0666783.1 2044940 g67065 i0 44.6 1.97727272727273 101 54 98.4 1 1 303 156 254 MDJ0666783.1 SDR family oxidoreductase [Desulfobacterales bacterium] diamond 609 75.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
26774759 26774759 PRJNA1144090_P_NODE_69541_length_303_cov_2.426087_g69006_i0 PRJNA1144090 69541 303 2.426087 7.35104361 Bacteria 2 Bacteria Bacteria 122 2.46e-31   NR RUM36426.1 895 g69006 i0 57.3 16.970297029703 89 38 88.1 0 36 302 139 227 RUM36426.1 MAG: TIGR01777 family protein [Desulfobulbus sp.] diamond 5142 122 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.
27007118 27007118 PRJNA1144090_P_NODE_97842_length_253_cov_1.055556_g97307_i0 PRJNA1144090 97842 253 1.055556 2.67055668 Desulfarculales bacterium 2478484 Bacteria Bacteria 101 1.16e-24   NR MDR1398206.1 2478484 g97307 i0 60.2 0.984189723320158 83 33 98.4 0 3 251 23 105 MDR1398206.1 50S ribosomal protein L4 [Desulfarculales bacterium] diamond 249 101 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales     Desulfarculales bacterium
27280806 27280806 PRJNA1144090_P_NODE_118143_length_236_cov_2.196319_g117608_i0 PRJNA1144090 118143 236 2.196319 5.18331284 root 1 Root_unresolved Root_unresolved 58.2 1.26e-7   NR MDR1776746.1 885 g117608 i0 51 5.3771186440678 51 23 64.8 1 159 7 770 818 MDR1776746.1 FkbM family methyltransferase [Desulfovibrio sp.] diamond 1269 58.5 0.994871794871795 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
27291749 27291749 PRJNA1144090_P_NODE_101843_length_249_cov_2.539773_g101308_i0 PRJNA1144090 101843 249 2.539773 6.32403477 Desulfococcaceae bacterium 3024398 Bacteria Bacteria 91.3 4.83e-21   NR MFP4348428.1 3024398 g101308 i0 50.6 2.92771084337349 81 36 97.6 1 243 1 1 77 MFP4348428.1 hypothetical protein [Desulfococcaceae bacterium] diamond 729 91.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae   Desulfococcaceae bacterium
27323409 27323409 PRJNA1144090_P_NODE_49363_length_363_cov_2.920690_g48828_i0 PRJNA1144090 49363 363 2.92069 10.6021047 Desulfosarcinaceae bacterium 3036616 Bacteria Bacteria 50.1 3.93e-4   NR MDJ0784654.1 3036616 g48828 i0 37.1 0.867768595041322 105 54 85.1 3 354 46 260 354 MDJ0784654.1 right-handed parallel beta-helix repeat-containing protein [Desulfosarcinaceae bacterium] diamond 315 50.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae   Desulfosarcinaceae bacterium
27418389 27418389 PRJNA1144090_P_NODE_47463_length_371_cov_1.567114_g46928_i0 PRJNA1144090 47463 371 1.567114 5.81399294 Desulfurivibrio sp. C 2093369 Bacteria Bacteria 55.1 7.32e-6   NR WP_395494133.1 3374371 g46928 i0 30.4 1.01078167115903 125 70 96.2 6 359 3 226 339 WP_395494133.1 YeiH family protein [Desulfurivibrio sp. C05AmB] diamond 375 55.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfurivibrio Desulfurivibrio sp. C05AmB
28701739 28701739 PRJNA1144090_P_NODE_14887_length_720_cov_4.655332_g14402_i0 PRJNA1144090 14887 720 4.655332 33.5183904 Pseudomonadati 3379134 Bacteria Bacteria 107 2.2400000000000002e-22   NR PLY07396.1 892 g14402 i0 36.4 3.49166666666667 217 103 90.4 5 13 663 43 224 PLY07396.1 MAG: hypothetical protein C0624_03645 [Desulfuromonas sp.] diamond 2514 108 0.990740740740741 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp.
29154976 29154976 PRJNA1144090_P_NODE_44349_length_385_cov_2.608974_g43814_i0 PRJNA1144090 44349 385 2.608974 10.0445499 Desulfobulbaceae bacterium 2053307 Bacteria Bacteria 139 1.7099999999999998e-35   NR MDH4317895.1 2053307 g43814 i0 55.1 1.83116883116883 118 48 88.1 1 384 46 623 740 MDH4317895.1 NADP-dependent isocitrate dehydrogenase [Desulfobulbaceae bacterium] diamond 705 139 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium
29218095 29218095 PRJNA1144090_P_NODE_83269_length_276_cov_1.502463_g82734_i0 PRJNA1144090 83269 276 1.502463 4.14679788 Syntrophus sp. SKADARSKE-3 3029837 Bacteria Bacteria 113 6.57e-27   NR MDQ5986055.1 3029837 g82734 i0 58.1 3.97826086956522 93 36 97.8 1 272 3 58 150 MDQ5986055.1 putative alkyl/aryl-sulfatase YjcS [Syntrophus sp. SKADARSKE-3] diamond 1098 113 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. SKADARSKE-3
29691130 29691130 PRJNA1144090_P_NODE_45830_length_378_cov_2.386885_g45295_i0 PRJNA1144090 45830 378 2.386885 9.0224253 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 45.8 0.0129   NR MCH7518166.1 2080303 g45295 i0 36.8 1.03968253968254 68 38 50 1 198 10 332 399 MCH7518166.1 hypothetical protein [Candidatus Dadabacteria bacterium] diamond 393 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
30153960 30153960 PRJNA1144090_P_NODE_38672_length_415_cov_4.456140_g38137_i0 PRJNA1144090 38672 415 4.45614 18.492981 Bacteria 2 Bacteria Bacteria 63.5 7.55e-10   NR PMP66663.1 1295609 g38137 i0 39 4.44578313253012 123 72 88.9 1 2 370 3 122 PMP66663.1 MAG: 50S ribosomal protein L14 [Thermodesulfobacterium geofontis] diamond 1845 63.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium geofontis
30323798 30323798 PRJNA1144090_P_NODE_2932_length_1607_cov_10.353325_g2737_i0 PRJNA1144090 2932 1607 10.353325 166.37793275 Desulfarculus baarsii 453230 Bacteria Bacteria 63.2 4.48e-7   NR WP_013259897.1 453230 g2737 i0 42.9 0.276291225886745 70 33 12.1 2 54 248 99 166 WP_013259897.1 hypothetical protein [Desulfarculus baarsii] diamond 444 63.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii
30355413 30355413 PRJNA1144090_P_NODE_91932_length_261_cov_3.047872_g91397_i0 PRJNA1144090 91932 261 3.047872 7.95494592 Pseudodesulfovibrio indicus 1716143 Bacteria Bacteria 79.7 2.6e-17   NR WP_066802444.1 1716143 g91397 i0 64.3 1.26436781609195 56 20 64.4 0 173 6 2 57 WP_066802444.1 RNA recognition motif domain-containing protein [Pseudodesulfovibrio indicus] diamond 330 79.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio indicus
30533325 30533325 PRJNA1144090_P_NODE_113333_length_243_cov_0.882353_g112798_i0 PRJNA1144090 113333 243 0.882353 2.14411779 Pseudomonadati 3379134 Bacteria Bacteria 69.7 1.17e-11   NR MBE0502605.1 2099678 g112798 i0 46.8 2.92592592592593 79 41 97.5 1 2 238 115 192 MBE0502605.1 DNA polymerase I [Desulfuromonadales bacterium] diamond 711 70.1 0.994293865905849 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium
31872127 31872127 PRJNA1144090_P_NODE_79497_length_283_cov_1.095238_g78962_i0 PRJNA1144090 79497 283 1.095238 3.09952354 Desulfolithobacter dissulfuricans 2795293 Bacteria Bacteria 142 4.439999999999999e-37   NR WP_267928000.1 2795293 g78962 i0 71 15.8904593639576 93 27 98.6 0 1 279 1128 1220 WP_267928000.1 hydantoinase B/oxoprolinase family protein [Desulfolithobacter dissulfuricans] diamond 4497 142 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfolithobacter Desulfolithobacter dissulfuricans
32399101 32399101 PRJNA1144090_P_NODE_45819_length_378_cov_2.475410_g45284_i0 PRJNA1144090 45819 378 2.47541 9.3570498 Pseudomonadati 3379134 Bacteria Bacteria 102 6.389999999999999e-23   NR MEE8397509.1 2044940 g45284 i0 46.8 5 126 47 99.2 2 377 3 142 248 MEE8397509.1 iron-containing alcohol dehydrogenase [Desulfobacterales bacterium] diamond 1890 102 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32494104 32494104 PRJNA1144090_P_NODE_74319_length_293_cov_1.686364_g73784_i0 PRJNA1144090 74319 293 1.686364 4.94104652 Bacteria 2 Bacteria Bacteria 62.4 8.16e-9   NR MEE9497616.1 2044940 g73784 i0 38.7 2.79522184300341 93 54 95.2 1 11 289 365 454 MEE9497616.1 SagB/ThcOx family dehydrogenase [Desulfobacterales bacterium] diamond 819 62.8 0.993630573248408 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;