RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA1144090", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 27 ✖

tax_kingdom 1

  • Pseudomonadati · 27 ✖

bioproject 1

  • PRJNA1144090 · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
287558 287558 PRJNA1144090_P_NODE_66101_length_311_cov_3.159664_g65566_i0 PRJNA1144090 66101 311 3.159664 9.82655504 Bdellovibrionota 3018035 Bacteria Bacteria 148 8.57e-41   NR MDC1174166.1 2081706 g65566 i0 68 1.98713826366559 103 33 99.4 0 309 1 242 344 MDC1174166.1 thiolase family protein [Bacteriovoracaceae bacterium] diamond 618 149 0.993288590604027 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
5390280 5390280 PRJNA1144090_P_NODE_21465_length_583_cov_8.570588_g20940_i0 PRJNA1144090 21465 583 8.570588 49.96652804 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 217 1.51e-68   NR MCB0379075.1 2053517 g20940 i0 63.5 1.70840480274443 167 55 84.4 3 492 1 3 166 MCB0379075.1 superoxide dismutase [Bdellovibrionales bacterium] diamond 996 217 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
5391082 5391082 PRJNA1144090_P_NODE_94625_length_257_cov_2.510870_g94090_i0 PRJNA1144090 94625 257 2.51087 6.4529359 Oligoflexales bacterium 2687297 Bacteria Bacteria 91.7 5.25e-20   NR MFK7873693.1 2687297 g94090 i0 50.6 2.76653696498054 83 40 96.9 1 253 5 104 185 MFK7873693.1 inositol oxygenase family protein [Oligoflexales bacterium] diamond 711 91.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
19412850 19412850 PRJNA1144090_P_NODE_104596_length_248_cov_0.880000_g104061_i0 PRJNA1144090 104596 248 0.88 2.1824 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 159 2.03e-44   NR PZP54047.1 349221 g104061 i0 93.9 0.991935483870968 82 5 99.2 0 1 246 94 175 PZP54047.1 MAG: peptidase S41 [Micavibrio aeruginosavorus] diamond 246 159 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
25259284 25259284 PRJNA1144090_P_NODE_105120_length_247_cov_2.609195_g104585_i0 PRJNA1144090 105120 247 2.609195 6.44471165 Micavibrio 213485 Bacteria Bacteria 457 4.05e-124   NTclustered gi|469926873|gb|CP003538.1| 349215 g104585 i0 100 202.485829959514 247 0 100 0 1 247 463271 463025 Micavibrio aeruginosavorus EPB, complete genome blastn 50014 457 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
26627329 26627329 PRJNA1144090_P_NODE_65081_length_314_cov_1.763485_g64546_i0 PRJNA1144090 65081 314 1.763485 5.5373429 Oligoflexia bacterium 2599941 Bacteria Bacteria 44.7 0.0183   NR MBF0315679.1 2599941 g64546 i0 25.6 0.859872611464968 90 67 86 0 7 276 175 264 MBF0315679.1 hypothetical protein [Oligoflexia bacterium] diamond 270 44.7 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
26721886 26721886 PRJNA1144090_P_NODE_64521_length_315_cov_3.061983_g63986_i0 PRJNA1144090 64521 315 3.061983 9.64524645 Halobacteriovorax marinus 97084 Bacteria Bacteria 118 4.1e-29   NR WP_096908312.1 97084 g63986 i0 62.5 0.838095238095238 88 33 83.8 0 269 6 6 93 WP_096908312.1 thiolase family protein [Halobacteriovorax marinus] diamond 264 118 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax marinus
26774764 26774764 PRJNA1144090_P_NODE_86161_length_271_cov_1.555556_g85626_i0 PRJNA1144090 86161 271 1.555556 4.21555676 Bacteria 2 Bacteria Bacteria 60.8 2.27e-8   NR MCB0419810.1 2053517 g85626 i0 40 2.97785977859779 90 50 95.2 2 262 5 676 765 MCB0419810.1 hypothetical protein [Bdellovibrionales bacterium] diamond 807 60.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26817466 26817466 PRJNA1144090_P_NODE_114141_length_242_cov_0.911243_g113606_i0 PRJNA1144090 114141 242 0.911243 2.20520806 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 132 5.47e-34   NR MBA2404931.1 2053517 g113606 i0 75 0.991735537190083 80 20 99.2 0 240 1 211 290 MBA2404931.1 hypothetical protein [Bdellovibrionales bacterium] diamond 240 132 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27196779 27196779 PRJNA1144090_P_NODE_78342_length_285_cov_1.377358_g77807_i0 PRJNA1144090 78342 285 1.377358 3.9254703 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 67.8 9.33e-11   NR MBQ46975.1 2026715 g77807 i0 38.4 1.04210526315789 99 57 100 2 1 285 153 251 MBQ46975.1 MFS transporter [Pseudobdellovibrionaceae bacterium] diamond 297 67.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27386735 27386735 PRJNA1144090_P_NODE_34723_length_442_cov_1.403794_g34188_i0 PRJNA1144090 34723 442 1.403794 6.20476948 Oligoflexales bacterium 2687297 Bacteria Bacteria 65.9 2.57e-9   NR MFK7826995.1 2687297 g34188 i0 43.5 0.468325791855204 69 39 46.8 0 108 314 95 163 MFK7826995.1 FAD-dependent oxidoreductase [Oligoflexales bacterium] diamond 207 65.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
27607767 27607767 PRJNA1144090_P_NODE_98264_length_252_cov_1.709497_g97729_i0 PRJNA1144090 98264 252 1.709497 4.30793244 Micavibrio sp. 2024841 Bacteria Bacteria 49.7 1.5e-4   NR MAM33505.1 2024841 g97729 i0 36.6 0.976190476190476 82 45 97.6 2 5 250 728 802 MAM33505.1 hypothetical protein [Micavibrio sp.] diamond 246 49.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
28512179 28512179 PRJNA1144090_P_NODE_105727_length_247_cov_0.885057_g105192_i0 PRJNA1144090 105727 247 0.885057 2.18609079 Bdellovibrio 958 Bacteria Bacteria 68.9 2.31e-11   NR PIS11894.1 1975526 g105192 i0 50.6 2.65991902834008 77 36 92.3 2 229 2 59 134 PIS11894.1 MAG: hypothetical protein COT73_01520 [Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8] diamond 657 68.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8
28796174 28796174 PRJNA1144090_P_NODE_116967_length_240_cov_2.754491_g116432_i0 PRJNA1144090 116967 240 2.754491 6.6107784 Pseudomonadati 3379134 Bacteria Bacteria 114 3.41e-30   NR MFN7455157.1 2026715 g116432 i0 60.8 3.9125 79 31 98.8 0 2 238 39 117 MFN7455157.1 lipocalin family protein [Pseudobdellovibrionaceae bacterium] diamond 939 114 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29123466 29123466 PRJNA1144090_P_NODE_78129_length_285_cov_1.952830_g77594_i0 PRJNA1144090 78129 285 1.95283 5.5655655 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 69.7 2.06e-11   NR HXH31984.1 2081706 g77594 i0 45.9 0.778947368421053 74 40 77.9 0 34 255 548 621 HXH31984.1 NAD-dependent DNA ligase LigA [Bacteriovoracaceae bacterium] diamond 222 69.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29312635 29312635 PRJNA1144090_P_NODE_90649_length_263_cov_2.947368_g90114_i0 PRJNA1144090 90649 263 2.947368 7.75157784 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 42.4 0.0332   NR MAW06827.1 2026745 g90114 i0 36.5 0.844106463878327 74 36 84.4 1 226 5 13 75 MAW06827.1 hypothetical protein [Halobacteriovoraceae bacterium] diamond 222 42.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
29659433 29659433 PRJNA1144090_P_NODE_105670_length_247_cov_0.885057_g105135_i0 PRJNA1144090 105670 247 0.885057 2.18609079 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 129 3.56e-35   NR PZP55324.1 349221 g105135 i0 77.5 0.97165991902834 80 18 97.2 0 7 246 86 165 PZP55324.1 MAG: peptidoglycan editing factor PgeF [Micavibrio aeruginosavorus] diamond 240 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
29691142 29691142 PRJNA1144090_P_NODE_57590_length_334_cov_5.413793_g57055_i0 PRJNA1144090 57590 334 5.413793 18.08206862 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 138 8.029999999999999e-37   NR MBU6152952.1 2053517 g57055 i0 61.5 1.86826347305389 104 40 93.4 0 22 333 1 104 MBU6152952.1 cystathionine gamma-synthase [Bdellovibrionales bacterium] diamond 624 138 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30196651 30196651 PRJNA1144090_P_NODE_104552_length_248_cov_0.880000_g104017_i0 PRJNA1144090 104552 248 0.88 2.1824 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 54.7 2.27e-6   NR MBK7891157.1 2053517 g104017 i0 44.4 1.57258064516129 63 33 73.8 1 195 13 281 343 MBK7891157.1 hypothetical protein [Bdellovibrionales bacterium] diamond 390 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30228360 30228360 PRJNA1144090_P_NODE_121632_length_201_cov_4.343750_g121097_i0 PRJNA1144090 121632 201 4.34375 8.7309375 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 52.8 6.37e-6   NR WP_015468752.1 453816 g121097 i0 39.4 1.05970149253731 71 38 98.5 2 1 198 314 384 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 213 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
30797050 30797050 PRJNA1144090_P_NODE_101574_length_250_cov_0.870056_g101039_i0 PRJNA1144090 101574 250 0.870056 2.17514 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 114 3.3200000000000005e-27   NR PZP54292.1 349221 g101039 i0 67.9 0.972 81 26 97.2 0 245 3 553 633 PZP54292.1 MAG: type II and III secretion system family protein [Micavibrio aeruginosavorus] diamond 243 114 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
31018429 31018429 PRJNA1144090_P_NODE_70495_length_301_cov_1.986842_g69960_i0 PRJNA1144090 70495 301 1.986842 5.98039442 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 72 2.1e-12   NR HLD75282.1 3034175 g69960 i0 59.4 3.47840531561462 64 26 63.8 0 299 108 236 299 HLD75282.1 TerC family protein [Bdellovibrionota bacterium] diamond 1047 72 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31461196 31461196 PRJNA1144090_P_NODE_60916_length_325_cov_1.833333_g60381_i0 PRJNA1144090 60916 325 1.833333 5.95833225 Silvanigrellales bacterium 2767476 Bacteria Bacteria 47.4 0.00212   NR MCA2961534.1 2767476 g60381 i0 27.2 0.747692307692308 81 59 74.8 0 54 296 47 127 MCA2961534.1 VCBS repeat-containing protein [Silvanigrellales bacterium] diamond 243 47.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales     Silvanigrellales bacterium
31587604 31587604 PRJNA1144090_P_NODE_22116_length_574_cov_2.796407_g21590_i0 PRJNA1144090 22116 574 2.796407 16.05137618 Silvanigrella paludirubra 2499159 Bacteria Bacteria 53.5 1.3e-4   NR WP_153418714.1 2499159 g21590 i0 38.5 0.339721254355401 65 38 34 1 3 197 145 207 WP_153418714.1 RCC1 domain-containing protein [Silvanigrella paludirubra] diamond 195 53.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella paludirubra
31608066 31608066 PRJNA1144090_P_NODE_37256_length_424_cov_4.792023_g36721_i0 PRJNA1144090 37256 424 4.792023 20.31817752 Bdellovibrio 958 Bacteria Bacteria 209 6.950000000000001e-64   NR WP_041873635.1 1569284 g36721 i0 70 18.9198113207547 140 42 99.1 0 423 4 234 373 WP_041873635.1 cystathionine gamma-synthase [Bdellovibrio sp. ArHS] diamond 8022 211 0.990521327014218 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. ArHS
32725660 32725660 PRJNA1144090_P_NODE_106460_length_247_cov_0.885057_g105925_i0 PRJNA1144090 106460 247 0.885057 2.18609079 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 96.3 8.4e-22   NR PZP55800.1 349221 g105925 i0 63.8 0.97165991902834 80 29 97.2 0 245 6 223 302 PZP55800.1 MAG: hypothetical protein DI586_05730 [Micavibrio aeruginosavorus] diamond 240 96.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
32757193 32757193 PRJNA1144090_P_NODE_75020_length_291_cov_4.426606_g74485_i0 PRJNA1144090 75020 291 4.426606 12.88142346 Oligoflexus tunisiensis 708132 Bacteria Bacteria 48.5 3.83e-4   NR WP_141736481.1 708132 g74485 i0 35.5 0.783505154639175 76 45 78.4 1 23 250 35 106 WP_141736481.1 EcsC family protein [Oligoflexus tunisiensis] diamond 228 48.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus tunisiensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;