RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1144090", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA1144090 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18139636 18139636 PRJNA1144090_P_NODE_96635_length_254_cov_2.674033_g96100_i0 PRJNA1144090 96635 254 2.674033 6.79204382 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.023   NTclustered gi|557876855|gb|KF726008.1| 11676 g96100 i0 100 0.110236220472441 28 0 11 0 79 106 589 562 HIV-1 isolate MSM293 from South Africa nonfunctional env protein (env) gene, complete sequence; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
29060066 29060066 PRJNA1144090_P_NODE_34108_length_446_cov_2.474531_g33573_i0 PRJNA1144090 34108 446 2.474531 11.03640826 Aglaonema bacilliform virus 1512278 Viruses Viruses 46.2 0.0196   NR YP_010085995.1 1512278 g33573 i0 34.5 0.369955156950673 55 35 36.3 1 326 165 854 908 YP_010085995.1 polyprotein [Aglaonema bacilliform virus] diamond 165 46.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Badnavirus Badnavirus aglaonemae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;