RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1144090", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16865025 16865025 PRJNA1144090_P_NODE_9674_length_909_cov_4.803828_g9249_i0 PRJNA1144090 9674 909 4.803828 43.66679652 Eukaryota 2759 Fungi Fungi 66.2 5.51e-8   NR EED44655.1 481877 g9249 i0 33 2.31023102310231 103 66 33.3 2 707 405 143 244 EED44655.1 myotonic dystrophy kinase like protein [Enterocytozoon bieneusi H348] diamond 2100 66.6 0.993993993993994 Eukaryota Opisthokonta Fungi Microsporidia     Enterocytozoonidae Enterocytozoon Enterocytozoon bieneusi
28965444 28965444 PRJNA1144090_P_NODE_67748_length_307_cov_4.854701_g67213_i0 PRJNA1144090 67748 307 4.854701 14.90393207 Enteropsectra breve 1912989 Fungi Fungi 63.9 2.9e-9   NR KAI5151754.1 1912989 g67213 i0 56.7 0.654723127035831 67 24 60.6 1 2 187 697 763 KAI5151754.1 transitional endoplasmic reticulum ATPase [Enteropsectra breve] diamond 201 63.9 1 Eukaryota Opisthokonta Fungi Microsporidia       Enteropsectra Enteropsectra breve
30944261 30944261 PRJNA1144090_P_NODE_52614_length_351_cov_2.082734_g52079_i0 PRJNA1144090 52614 351 2.082734 7.31039634 Eukaryota 2759 Fungi Fungi 52.4 5.38e-5   NR ELQ73893.1 72359 g52079 i0 43.9 1.84615384615385 66 36 55.6 1 28 222 94 159 ELQ73893.1 Major Facilitator Superfamily (MFS) [Trachipleistophora hominis] diamond 648 52.4 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Trachipleistophora Trachipleistophora hominis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;