RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1144090", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10490429 10490429 PRJNA1144090_P_NODE_10229_length_882_cov_1.666255_g9798_i0 PRJNA1144090 10229 882 1.666255 14.6963691 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 163 3.42e-41   NR MBI4372266.1 2035772 g9798 i0 49.7 0.493197278911565 145 64 49.3 1 881 447 1646 1781 MBI4372266.1 DUF89 family protein [Candidatus Omnitrophota bacterium] diamond 435 163 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30260334 30260334 PRJNA1144090_P_NODE_66252_length_311_cov_1.920168_g65717_i0 PRJNA1144090 66252 311 1.920168 5.97172248 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 50.4 1.48e-4   NR MBI3990815.1 2035772 g65717 i0 50 0.617363344051447 64 25 60.8 3 191 3 243 300 MBI3990815.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 192 50.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32346985 32346985 PRJNA1144090_P_NODE_121159_length_215_cov_4.316901_g120624_i0 PRJNA1144090 121159 215 4.316901 9.28133715 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0269   NR MFH1384491.1 2035772 g120624 i0 30.3 1.84186046511628 66 46 92.1 0 211 14 3762 3827 MFH1384491.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 396 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;