RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1144090", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28523311 28523311 PRJNA1144090_P_NODE_28207_length_498_cov_2.141176_g27673_i0 PRJNA1144090 28207 498 2.141176 10.66305648 Chlorobiota bacterium 2268192 Bacteria Bacteria 161 1.4899999999999999e-47   NR NPA42924.1 2268192 g27673 i0 50.8 1.59036144578313 132 65 79.5 0 1 396 20 151 NPA42924.1 50S ribosomal protein L13 [Chlorobiota bacterium] diamond 792 161 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
30501803 30501803 PRJNA1144090_P_NODE_20373_length_601_cov_4.155303_g19848_i0 PRJNA1144090 20373 601 4.155303 24.97337103 root 1 Root_unresolved Root_unresolved 177 6.399999999999998e-53   NR MFN3196531.1 2268192 g19848 i0 61.9 8.07154742096506 134 50 66.9 1 402 1 6 138 MFN3196531.1 glutathione peroxidase [Chlorobiota bacterium] diamond 4851 178 0.99438202247191 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
31239410 31239410 PRJNA1144090_P_NODE_34835_length_441_cov_2.048913_g34300_i0 PRJNA1144090 34835 441 2.048913 9.03570633 Chlorobiota bacterium 2268192 Bacteria Bacteria 137 1.18e-37   NR NOY36984.1 2268192 g34300 i0 44.4 0.979591836734694 144 80 98 0 3 434 48 191 NOY36984.1 superoxide dismutase [Chlorobiota bacterium] diamond 432 137 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;