RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1144090", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Roizmaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Roizmaniibacteriota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1144090 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27344166 27344166 PRJNA1144090_P_NODE_108203_length_246_cov_0.890173_g107668_i0 PRJNA1144090 108203 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 45.1 0.00289   NR PIQ73712.1 1974856 g107668 i0 36.2 2.84146341463415 58 36 69.5 1 75 245 3 60 PIQ73712.1 MAG: single-stranded DNA-binding protein [Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8] diamond 699 45.1 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_36_8
28933763 28933763 PRJNA1144090_P_NODE_3928_length_1421_cov_6.130564_g3682_i0 PRJNA1144090 3928 1421 6.130564 87.11531444 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 86.3 8.27e-15   NR MFS8160432.1 2282149 g3682 i0 40.8 0.749472202674173 98 53 20.7 2 947 1240 182 274 MFS8160432.1 hypothetical protein [Candidatus Roizmanbacteria bacterium] diamond 1065 86.3 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
31998765 31998765 PRJNA1144090_P_NODE_89218_length_266_cov_1.440415_g88683_i0 PRJNA1144090 89218 266 1.440415 3.8315039 Candidatus Roizmanbacteria bacterium CG_4_1 2282149 Bacteria Bacteria 54.7 2.9e-6   NR PIZ65979.1 1974824 g88683 i0 36.6 1.88345864661654 82 50 90.2 1 265 26 276 357 PIZ65979.1 MAG: sodium:proton exchanger [Candidatus Roizmanbacteria bacterium CG_4_10_14_0_2_um_filter_39_12] diamond 501 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium CG_4_10_14_0_2_um_filter_39_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;