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contig_metadata

32 rows where bioproject = "PRJNA1143173" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1143173 · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
286086 286086 PRJNA1143173_P_NODE_22521_length_279_cov_6.461165_g22495_i0 PRJNA1143173 22521 279 6.461165 18.02665035 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 189 1.11e-53   NR HRJ71053.1 2832348 g22495 i0 95.7 2 93 4 100 0 1 279 4 96 HRJ71053.1 valine--tRNA ligase [Terrimicrobiaceae bacterium] diamond 558 189 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
6663786 6663786 PRJNA1143173_P_NODE_11246_length_310_cov_3.215190_g11220_i0 PRJNA1143173 11246 310 3.21519 9.967089 Opitutaceae bacterium 2006848 Bacteria Bacteria 94.4 1.76e-22   NR HUG12404.1 2006848 g11220 i0 88 0.483870967741935 50 6 48.4 0 161 310 59 108 HUG12404.1 GxxExxY protein [Opitutaceae bacterium] diamond 150 94.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
10490080 10490080 PRJNA1143173_P_NODE_37689_length_234_cov_8.049689_g37663_i0 PRJNA1143173 37689 234 8.049689 18.83627226 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 154 5.5800000000000005e-33   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g37663 i0 79.186 0.944444444444444 221 46 94 0 6 226 3364327 3364107 Luteolibacter sp. SL250 chromosome blastn 221 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
13040144 13040144 PRJNA1143173_P_NODE_34871_length_244_cov_1.695906_g34845_i0 PRJNA1143173 34871 244 1.695906 4.13801064 Horticoccus luteus 2862869 Bacteria Bacteria 213 9.540000000000001e-51   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g34845 i0 83.857 0.913934426229508 223 36 91 0 1 223 2934400 2934622 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 223 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
15588844 15588844 PRJNA1143173_P_NODE_13113_length_299_cov_9.110619_g13087_i0 PRJNA1143173 13113 299 9.110619 27.24075081 Sulfuriroseicoccus oceanibius 2707525 Bacteria Bacteria 56.5 0.002   NTclustered gi|1953472588|gb|CP066776.1| 2707525 g13087 i0 92.5 0.133779264214047 40 2 13 1 166 204 1849572 1849533 Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome blastn 40 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Sulfuriroseicoccus Sulfuriroseicoccus oceanibius
20687784 20687784 PRJNA1143173_P_NODE_29437_length_259_cov_4.989247_g29411_i0 PRJNA1143173 29437 259 4.989247 12.92214973 Opitutaceae bacterium 2006848 Bacteria Bacteria 122 2.08e-30   NR MBC8039425.1 2006848 g29411 i0 92 0.868725868725869 75 6 86.9 0 35 259 321 395 MBC8039425.1 mucoidy inhibitor MuiA family protein [Opitutaceae bacterium] diamond 225 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
23238891 23238891 PRJNA1143173_P_NODE_37939_length_233_cov_11.781250_g37913_i0 PRJNA1143173 37939 233 11.78125 27.4503125 Pseudomonadati 3379134 Bacteria Bacteria 83.2 9.95e-17   NR HUY98059.1 2499141 g37913 i0 60.6 1.85407725321888 71 28 91.4 0 4 216 276 346 HUY98059.1 chemotaxis-specific protein-glutamate methyltransferase CheB [Verrucomicrobiia bacterium] diamond 432 84 0.990476190476191 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
26627227 26627227 PRJNA1143173_P_NODE_15421_length_298_cov_4.933333_g15395_i0 PRJNA1143173 15421 298 4.933333 14.70133234 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 60.8 2.37e-8   NR MFO1461538.1 2026799 g15395 i0 65.1 1.85234899328859 43 15 43.3 0 136 8 225 267 MFO1461538.1 DUF1365 domain-containing protein [Verrucomicrobiota bacterium] diamond 552 60.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
26721807 26721807 PRJNA1143173_P_NODE_27541_length_265_cov_2.286458_g27515_i0 PRJNA1143173 27541 265 2.286458 6.0591137 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 149 3.09e-43   NR HEX4343208.1 2499141 g27515 i0 81.8 1.99245283018868 88 16 99.6 0 264 1 68 155 HEX4343208.1 NADH-quinone oxidoreductase subunit C [Verrucomicrobiia bacterium] diamond 528 149 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27596687 27596687 PRJNA1143173_P_NODE_18264_length_292_cov_3.931507_g18238_i0 PRJNA1143173 18264 292 3.931507 11.48000044 Candidatus Udaeobacter 1921511 Bacteria Bacteria 181 3.94e-56   NR PYK27439.1 2026799 g18238 i0 93.8 7.88013698630137 97 6 99.7 0 291 1 61 157 PYK27439.1 MAG: hypothetical protein DME59_04725 [Verrucomicrobiota bacterium] diamond 2301 181 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27607642 27607642 PRJNA1143173_P_NODE_23144_length_277_cov_10.372549_g23118_i0 PRJNA1143173 23144 277 10.372549 28.73196073 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 59.3 8.28e-8   NR HXM26603.1 2201154 g23118 i0 65.9 1.32129963898917 44 15 47.7 0 1 132 382 425 HXM26603.1 DUF255 domain-containing protein [Chthoniobacterales bacterium] diamond 366 59.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28460204 28460204 PRJNA1143173_P_NODE_18126_length_292_cov_7.050228_g18100_i0 PRJNA1143173 18126 292 7.050228 20.58666576 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 139 4.26e-36   NR PYK65670.1 2026799 g18100 i0 89.7 0.698630136986301 68 7 69.9 0 291 88 558 625 PYK65670.1 MAG: amidohydrolase [Verrucomicrobiota bacterium] diamond 204 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28733307 28733307 PRJNA1143173_P_NODE_35787_length_241_cov_3.916667_g35761_i0 PRJNA1143173 35787 241 3.916667 9.43916747 Bacteria 2 Bacteria Bacteria 84.7 6.05e-17   NR MFN2475978.1 2201154 g35761 i0 47.5 1.99170124481328 80 42 99.6 0 240 1 315 394 MFN2475978.1 prolyl oligopeptidase family protein [Chthoniobacterales bacterium] diamond 480 84.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
28933707 28933707 PRJNA1143173_P_NODE_9608_length_310_cov_4.793249_g9582_i0 PRJNA1143173 9608 310 4.793249 14.8590719 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 71.6 4.74e-12   NR MFO1438746.1 2026800 g9582 i0 65.3 0.474193548387097 49 17 47.4 0 148 2 233 281 MFO1438746.1 hypothetical protein [Verrucomicrobiaceae bacterium] diamond 147 71.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29028650 29028650 PRJNA1143173_P_NODE_25088_length_272_cov_3.025126_g25062_i0 PRJNA1143173 25088 272 3.025126 8.22834272 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 104 8.74e-24   NR HEV7868848.1 2811408 g25062 i0 60.7 2.02941176470588 89 35 98.2 0 6 272 128 216 HEV7868848.1 CotH kinase family protein [Chthoniobacteraceae bacterium] diamond 552 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
29375622 29375622 PRJNA1143173_P_NODE_16749_length_296_cov_3.704036_g16723_i0 PRJNA1143173 16749 296 3.704036 10.96394656 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 87.4 1.44e-17   NR HUR41523.1 2499141 g16723 i0 49 1.01351351351351 100 46 97.3 2 289 2 785 883 HUR41523.1 S8 family serine peptidase [Verrucomicrobiia bacterium] diamond 300 87.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29396278 29396278 PRJNA1143173_P_NODE_43029_length_208_cov_6.666667_g43003_i0 PRJNA1143173 43029 208 6.666667 13.86666736 Pseudomonadati 3379134 Bacteria Bacteria 92.4 6.2e-20   NR OHE77447.1 1802432 g43003 i0 64.7 6.90865384615385 68 24 98.1 0 206 3 393 460 OHE77447.1 MAG: hypothetical protein A2107_14465 [Verrucomicrobia bacterium GWF2_62_7] diamond 1437 92.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium GWF2_62_7
29596343 29596343 PRJNA1143173_P_NODE_35850_length_241_cov_2.690476_g35824_i0 PRJNA1143173 35850 241 2.690476 6.48404716 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 48.9 2.41e-4   NR RYD85394.1 2026800 g35824 i0 68.6 0.435684647302905 35 11 43.6 0 106 2 2 36 RYD85394.1 MAG: hypothetical protein EOP84_02635 [Verrucomicrobiaceae bacterium] diamond 105 48.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29849358 29849358 PRJNA1143173_P_NODE_13751_length_299_cov_5.579646_g13725_i0 PRJNA1143173 13751 299 5.579646 16.68314154 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 43.9 0.00834   NR MDD5199212.1 2832348 g13725 i0 51.5 0.832775919732441 33 16 33.1 0 13 111 44 76 MDD5199212.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 249 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
29933247 29933247 PRJNA1143173_P_NODE_41031_length_220_cov_7.122449_g41005_i0 PRJNA1143173 41031 220 7.122449 15.6693878 Prosthecobacter 48463 Bacteria Bacteria 106 9.01e-25   NR WP_133795471.1 48464 g41005 i0 68.1 6.87272727272727 72 23 98.2 0 217 2 768 839 WP_133795471.1 response regulator [Prosthecobacter fusiformis] diamond 1512 107 0.990654205607477 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
29944162 29944162 PRJNA1143173_P_NODE_24971_length_272_cov_4.994975_g24945_i0 PRJNA1143173 24971 272 4.994975 13.586332 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 126 2.32e-31   NR MBP9903815.1 2026799 g24945 i0 66.7 1.98529411764706 90 28 99.3 1 272 3 335 422 MBP9903815.1 S8 family serine peptidase [Verrucomicrobiota bacterium] diamond 540 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30090861 30090861 PRJNA1143173_P_NODE_43432_length_205_cov_11.795455_g43406_i0 PRJNA1143173 43432 205 11.795455 24.18068275 Bacteria 2 Bacteria Bacteria 134 9.64e-35   NR MEY2467239.1 2026799 g43406 i0 95.5 19.609756097561 67 3 98 0 203 3 126 192 MEY2467239.1 isoleucyl-tRNA synthetase [Verrucomicrobiota bacterium] diamond 4020 135 0.992592592592593 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30501794 30501794 PRJNA1143173_P_NODE_5313_length_372_cov_4.190635_g5287_i0 PRJNA1143173 5313 372 4.190635 15.5891622 Bacteria 2 Bacteria Bacteria 153 2.5e-40   NR MCC7373030.1 2026801 g5287 i0 60.2 4.92741935483871 123 49 99.2 0 1 369 747 869 MCC7373030.1 DEAD/DEAH box helicase [Verrucomicrobiales bacterium] diamond 1833 153 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30659734 30659734 PRJNA1143173_P_NODE_44733_length_196_cov_15.585366_g44707_i0 PRJNA1143173 44733 196 15.585366 30.54731736 Pseudomonadati 3379134 Bacteria Bacteria 70.9 1.48e-12   NR HTT55715.1 2006848 g44707 i0 60.3 8.75510204081633 63 25 96.4 0 192 4 111 173 HTT55715.1 TIGR01777 family oxidoreductase [Opitutaceae bacterium] diamond 1716 70.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31418229 31418229 PRJNA1143173_P_NODE_13676_length_299_cov_5.831858_g13650_i0 PRJNA1143173 13676 299 5.831858 17.43725542 Bacteria 2 Bacteria Bacteria 100 4.38e-23   NR RRK00117.1 278958 g13650 i0 92 1.50501672240803 50 4 50.2 0 149 298 37 86 RRK00117.1 HAD family hydrolase [Opitutaceae bacterium TAV3] diamond 450 101 0.99009900990099 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV3
31556035 31556035 PRJNA1143173_P_NODE_39836_length_226_cov_7.352941_g39810_i0 PRJNA1143173 39836 226 7.352941 16.61764666 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 64.7 1.07e-10   NR MBL9139911.1 2026801 g39810 i0 59.6 0.690265486725664 52 21 69 0 1 156 123 174 MBL9139911.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 156 64.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31808836 31808836 PRJNA1143173_P_NODE_42877_length_209_cov_6.044118_g42851_i0 PRJNA1143173 42877 209 6.044118 12.63220662 Luteolibacter sp. 1962973 Bacteria Bacteria 120 3.9999999999999997e-32   NR HVJ46102.1 1962973 g42851 i0 81.2 0.990430622009569 69 13 99 0 1 207 24 92 HVJ46102.1 MotA/TolQ/ExbB proton channel family protein [Luteolibacter sp.] diamond 207 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
31935244 31935244 PRJNA1143173_P_NODE_39357_length_228_cov_6.206452_g39331_i0 PRJNA1143173 39357 228 6.206452 14.15071056 Prosthecobacter sp. 1965333 Bacteria Bacteria 65.5 2.75e-11   NR HRH95222.1 1965333 g39331 i0 38.2 1.97368421052632 76 46 100 1 1 228 44 118 HRH95222.1 hypothetical protein [Prosthecobacter sp.] diamond 450 65.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
31955880 31955880 PRJNA1143173_P_NODE_14777_length_299_cov_3.084071_g14751_i0 PRJNA1143173 14777 299 3.084071 9.22137229 Pseudomonadati 3379134 Bacteria Bacteria 94.4 4.32e-21   NR MEW6304696.1 2026799 g14751 i0 47.6 2.01672240802676 103 48 97.3 1 296 6 85 187 MEW6304696.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 603 95.1 0.992639327024185 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31966848 31966848 PRJNA1143173_P_NODE_11058_length_310_cov_3.396624_g11032_i0 PRJNA1143173 11058 310 3.396624 10.5295344 Luteolibacter sp. 1962973 Bacteria Bacteria 58.9 1.36e-7   NR HVJ45292.1 1962973 g11032 i0 61.2 0.474193548387097 49 19 47.4 0 309 163 216 264 HVJ45292.1 hypothetical protein [Luteolibacter sp.] diamond 147 58.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
32093523 32093523 PRJNA1143173_P_NODE_32238_length_251_cov_5.196629_g32212_i0 PRJNA1143173 32238 251 5.196629 13.04353879 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 124 8.279999999999998e-32   NR MEY4387190.1 2026799 g32212 i0 80.7 0.99203187250996006 83 16 99.2 0 2 250 16 98 MEY4387190.1 Lipid disaccharide synthetase [Verrucomicrobiota bacterium] diamond 249 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32473449 32473449 PRJNA1143173_P_NODE_32819_length_249_cov_12.284091_g32793_i0 PRJNA1143173 32819 249 12.284091 30.58738659 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 120 1.05e-29   NR HEU4677913.1 2832348 g32793 i0 67.5 2.96385542168675 83 26 98.8 1 3 248 306 388 HEU4677913.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 738 120 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;