RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1143173" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1143173 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14315138 14315138 PRJNA1143173_P_NODE_25512_length_271_cov_1.328283_g25486_i0 PRJNA1143173 25512 271 1.328283 3.59964693 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.025   NTclustered gi|687305182|emb|LK582424.1| 57078 g25486 i0 92.105 0.140221402214022 38 2 14 1 147 184 900 864 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0014063 blastn 38 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;