RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1143173" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1143173 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11764832 11764832 PRJNA1143173_P_NODE_23890_length_275_cov_5.440594_g23864_i0 PRJNA1143173 23890 275 5.440594 14.9616335 Illex coindetii 109628 Mollusca Mollusca 496 9.709999999999999e-136   NTclustered gi|1929782304|gb|MW233711.1| 109628 g23864 i0 98.909 51.4690909090909 275 3 100 0 1 275 3010 3284 Illex coindetii voucher IL010 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 14154 496 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Oegopsida Ommastrephidae Illex Illex coindetii
20688085 20688085 PRJNA1143173_P_NODE_43077_length_208_cov_5.081481_g43051_i0 PRJNA1143173 43077 208 5.081481 10.56948048 Pecten maximus 6579 Mollusca Mollusca 56.5 0.001   NTclustered gi|1835490665|ref|XM_033893261.1| 6579 g43051 i0 96.97 0.158653846153846 33 1 16 0 60 92 717 749 PREDICTED: Pecten maximus peptidase inhibitor 15-A-like (LOC117333845), mRNA blastn 33 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus
24511766 24511766 PRJNA1143173_P_NODE_10420_length_310_cov_3.970464_g10394_i0 PRJNA1143173 10420 310 3.970464 12.3084384 Physella acuta 109671 Mollusca Mollusca 52.8 0.029   NTclustered gi|2572453023|ref|XM_059290512.1| 109671 g10394 i0 100 0.0903225806451613 28 0 9 0 267 294 1949 1922 PREDICTED: Physella acuta putative ankyrin repeat protein RF_0381 (LOC131934375), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;