RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1143173", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

  • Bacillati · 5 ✖

bioproject 1

  • PRJNA1143173 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
285934 285934 PRJNA1143173_P_NODE_15081_length_298_cov_8.822222_g15055_i0 PRJNA1143173 15081 298 8.822222 26.29022156 Candidatus Malacoplasma girerdii 1318617 Bacteria Bacteria 281 3.24e-71   NTclustered gi|701168938|gb|CP007711.1| 1318617 g15055 i0 100 2.05369127516779 152 0 100 0 1 152 165188 165339 Candidatus Mycoplasma girerdii strain VCU_M1, complete genome blastn 612 281 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Candidatus Malacoplasma girerdii
21963173 21963173 PRJNA1143173_P_NODE_33698_length_247_cov_4.293103_g33672_i0 PRJNA1143173 33698 247 4.293103 10.60396441 Metamycoplasma faucium 56142 Bacteria Bacteria 446 8.759999999999998e-121   NTclustered gi|2708452869|gb|CP088155.1| 56142 g33672 i0 99.19 2.25101214574899 247 2 100 0 1 247 89666 89912 Metamycoplasma faucium strain UMCG-MFM1 chromosome, complete genome blastn 556 446 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
24511988 24511988 PRJNA1143173_P_NODE_20340_length_286_cov_3.244131_g20314_i0 PRJNA1143173 20340 286 3.244131 9.27821466 Candidatus Malacoplasma girerdii 1318617 Bacteria Bacteria 529 1e-145   NTclustered gi|1214721733|gb|CP020122.1| 1318617 g20314 i0 100 2 286 0 100 0 1 286 245165 244880 MAG: Candidatus Malacoplasma girerdii isolate UC_B3 chromosome, complete genome blastn 572 529 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Candidatus Malacoplasma girerdii
29407173 29407173 PRJNA1143173_P_NODE_41709_length_216_cov_6.734266_g41683_i0 PRJNA1143173 41709 216 6.734266 14.54601456 Mollicutes bacterium PWAP 2885760 Bacteria Bacteria 67.4 5.2e-11   NR MCC3161169.1 2885760 g41683 i0 47 1.88888888888889 66 35 91.7 0 203 6 310 375 MCC3161169.1 DNA topoisomerase IV subunit B [Mollicutes bacterium PWAP] diamond 408 67.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium PWAP
32367527 32367527 PRJNA1143173_P_NODE_9539_length_310_cov_4.877637_g9513_i0 PRJNA1143173 9539 310 4.877637 15.1206747 Mollicutes 31969 Bacteria Bacteria 53.1 1.65e-5   NR MFU8787282.1 3107147 g9513 i0 58.5 1.30645161290323 41 17 39.7 0 149 27 81 121 MFU8787282.1 ATP-dependent DNA helicase [Candidatus Izemoplasmataceae bacterium] diamond 405 53.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae   Candidatus Izemoplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;