RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1143173", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1143173 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
286334 286334 PRJNA1143173_P_NODE_3321_length_447_cov_6.572193_g3295_i0 PRJNA1143173 3321 447 6.572193 29.37770271 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 309 2.33e-79   NTclustered gi|209883090|ref|XM_002142934.1| 441375 g3295 i0 84.498 0.736017897091723 329 34 73 12 1 325 649 964 Cryptosporidium muris RN66 uncharacterized protein (CMU_002460), partial mRNA blastn 329 309 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
4113092 4113092 PRJNA1143173_P_NODE_17224_length_295_cov_2.932432_g17198_i0 PRJNA1143173 17224 295 2.932432 8.6506744 Porospora cf. gigantea B 2853592 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|2806430765|ref|XM_068522508.1| 2853592 g17198 i0 100 0.386440677966102 29 0 10 0 236 264 392 364 MAG: Porospora cf. gigantea B uncharacterized protein (KVP17_004375), partial mRNA blastn 114 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Porosporidae Porospora Porospora cf. gigantea B
10490229 10490229 PRJNA1143173_P_NODE_44249_length_200_cov_4.629921_g44223_i0 PRJNA1143173 44249 200 4.629921 9.259842 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 298 2.02e-76   NTclustered gi|209883090|ref|XM_002142934.1| 441375 g44223 i0 93.5 1.29 200 13 100 0 1 200 241 440 Cryptosporidium muris RN66 uncharacterized protein (CMU_002460), partial mRNA blastn 258 298 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
18137823 18137823 PRJNA1143173_P_NODE_17775_length_293_cov_5.550000_g17749_i0 PRJNA1143173 17775 293 5.55 16.2615 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 219 2.5299999999999993e-52   NTclustered gi|820695469|tpe|LN714488.1| 572307 g17749 i0 94.366 2.43344709897611 142 8 99 0 150 291 157471 157330 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 713 219 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
19412174 19412174 PRJNA1143173_P_NODE_23876_length_275_cov_5.851485_g23850_i0 PRJNA1143173 23876 275 5.851485 16.09158375 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 364 2.859999999999999e-96   NTclustered gi|820695469|tpe|LN714488.1| 572307 g23850 i0 90.545 7.86181818181818 275 26 100 0 1 275 157437 157711 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 2162 364 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;