RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1143173", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1143173 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27628317 27628317 PRJNA1143173_P_NODE_21584_length_282_cov_4.703349_g21558_i0 PRJNA1143173 21584 282 4.703349 13.26344418 root 1 Root_unresolved Root_unresolved 145 2.05e-38   NR NLF85123.1 1932692 g21558 i0 75.3 2.96808510638298 93 23 98.9 0 3 281 138 230 NLF85123.1 hypothetical protein [Lentisphaerota bacterium] diamond 837 145 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28491664 28491664 PRJNA1143173_P_NODE_29687_length_258_cov_9.654054_g29661_i0 PRJNA1143173 29687 258 9.654054 24.90745932 Lentisphaerota bacterium 1932692 Bacteria Bacteria 50.4 7.36e-5   NR MBT3375305.1 1932692 g29661 i0 38.9 1.2906976744186 90 47 96.5 3 10 258 98 186 MBT3375305.1 NYN domain-containing protein [Lentisphaerota bacterium] diamond 333 50.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32093522 32093522 PRJNA1143173_P_NODE_32018_length_252_cov_2.905028_g31992_i0 PRJNA1143173 32018 252 2.905028 7.32067056 Lentisphaerota bacterium 1932692 Bacteria Bacteria 134 1.77e-34   NR MBI3987719.1 1932692 g31992 i0 81 1 84 16 100 0 252 1 111 194 MBI3987719.1 hypothetical protein [Lentisphaerota bacterium] diamond 252 134 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32788437 32788437 PRJNA1143173_P_NODE_32960_length_249_cov_4.931818_g32934_i0 PRJNA1143173 32960 249 4.931818 12.28022682 Lentisphaerota bacterium 1932692 Bacteria Bacteria 131 4.4e-35   NR MEI6420573.1 1932692 g32934 i0 82.9 0.987951807228916 82 14 98.8 0 2 247 4 85 MEI6420573.1 adenylate/guanylate cyclase domain-containing protein [Lentisphaerota bacterium] diamond 246 131 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;