RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1143173", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1143173 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9213907 9213907 PRJNA1143173_P_NODE_11588_length_310_cov_2.898734_g11562_i0 PRJNA1143173 11588 310 2.898734 8.9860754 Polychytrium aggregatum 110093 Fungi Fungi 82.4 9.25e-16   NR XP_052962119.1 110093 g11562 i0 71.4 1.89677419354839 49 14 47.4 0 310 164 146 194 XP_052962119.1 pyridoxal phosphate-dependent transferase [Polychytrium aggregatum] diamond 588 82.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
27734144 27734144 PRJNA1143173_P_NODE_35244_length_243_cov_0.905882_g35218_i0 PRJNA1143173 35244 243 0.905882 2.20129326 Caulochytrium protostelioides 1555241 Fungi Fungi 111 5.7e-27   NR RKO99972.1 1555241 g35218 i0 67.1 0.975308641975309 79 26 97.5 0 5 241 143 221 RKO99972.1 hypothetical protein CXG81DRAFT_13783 [Caulochytrium protostelioides] diamond 237 111 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Caulochytriales Caulochytriaceae Caulochytrium Caulochytrium protostelioides
29091616 29091616 PRJNA1143173_P_NODE_25148_length_272_cov_2.105528_g25122_i0 PRJNA1143173 25148 272 2.105528 5.72703616 Hyaloraphidium curvatum 82268 Fungi Fungi 44.7 0.0112   NR KAI9018967.1 82268 g25122 i0 48.6 0.408088235294118 37 19 40.8 0 210 100 714 750 KAI9018967.1 Sec34-like family-domain-containing protein [Hyaloraphidium curvatum] diamond 111 44.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
31872023 31872023 PRJNA1143173_P_NODE_9297_length_310_cov_5.236287_g9271_i0 PRJNA1143173 9297 310 5.236287 16.2324897 Chytriomyces hyalinus 4814 Fungi Fungi 44.7 0.0183   NR KAJ3225201.1 4814 g9271 i0 38.1 0.406451612903226 42 26 40.6 0 286 161 1538 1579 KAJ3225201.1 Regulator of G-protein signaling 20 [Chytriomyces hyalinus] diamond 126 44.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;