RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1143173", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1143173 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30133266 30133266 PRJNA1143173_P_NODE_44292_length_199_cov_11.722222_g44266_i0 PRJNA1143173 44292 199 11.722222 23.32722178 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 48.9 1.17e-4   NR MDX1420898.1 2838334 g44266 i0 68.1 1.4321608040201 47 12 67.8 2 135 1 1 46 MDX1420898.1 hypothetical protein [Rubricoccaceae bacterium] diamond 285 48.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
32725623 32725623 PRJNA1143173_P_NODE_13020_length_299_cov_10.207965_g12994_i0 PRJNA1143173 13020 299 10.207965 30.52181535 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 75.1 3.11e-13   NR HEX9950552.1 2838334 g12994 i0 74 1.00334448160535 50 13 50.2 0 5 154 561 610 HEX9950552.1 cyanophycin synthetase [Rubricoccaceae bacterium] diamond 300 75.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;