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contig_metadata

24 rows where bioproject = "PRJNA1143173", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 24 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 24 ✖

bioproject 1

  • PRJNA1143173 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2837060 2837060 PRJNA1143173_P_NODE_29063_length_260_cov_5.941176_g29037_i0 PRJNA1143173 29063 260 5.941176 15.4470576 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 265 2.8e-66   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g29037 i0 85.171 2.14615384615385 263 34 100 5 1 260 1785640 1785380 Gemmatimonas phototrophica strain AP64, complete genome blastn 558 265 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
7939104 7939104 PRJNA1143173_P_NODE_17847_length_293_cov_4.690909_g17821_i0 PRJNA1143173 17847 293 4.690909 13.74436337 Pseudomonadati 3379134 Bacteria Bacteria 102 7.819999999999998e-24   NR HEX2638185.1 2448054 g17821 i0 83.9 2.53924914675768 62 9 62.5 1 110 292 1 62 HEX2638185.1 LLM class flavin-dependent oxidoreductase [Gemmatimonadales bacterium] diamond 744 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
7939320 7939320 PRJNA1143173_P_NODE_26987_length_266_cov_6.284974_g26961_i0 PRJNA1143173 26987 266 6.284974 16.71803084 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 151 1.44e-40   NR HEX7978289.1 2026741 g26961 i0 85.2 1.98496240601504 88 13 99.2 0 3 266 23 110 HEX7978289.1 Clp protease N-terminal domain-containing protein [Gemmatimonadaceae bacterium] diamond 528 151 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
13039675 13039675 PRJNA1143173_P_NODE_13291_length_299_cov_7.623894_g13265_i0 PRJNA1143173 13291 299 7.623894 22.79544306 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 106 2.1e-18   NTclustered gi|575462059|gb|CP007130.1| 861299 g13265 i0 85.577 2.00334448160535 104 11 34 4 192 293 66618 66517 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence blastn 599 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15589206 15589206 PRJNA1143173_P_NODE_28513_length_262_cov_2.756614_g28487_i0 PRJNA1143173 28513 262 2.756614 7.22232868 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 484 1.99e-132   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g28487 i0 100 2 262 0 100 0 1 262 2511352 2511613 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 524 484 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
16863033 16863033 PRJNA1143173_P_NODE_12994_length_299_cov_10.681416_g12968_i0 PRJNA1143173 12994 299 10.681416 31.93743384 Longimicrobium sp. 2029185 Bacteria Bacteria 103 1.06e-23   NR WP_331123564.1 2029185 g12968 i0 98 0.501672240802676 50 1 50.2 0 151 2 37 86 WP_331123564.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase [Longimicrobium sp.] diamond 150 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
16863368 16863368 PRJNA1143173_P_NODE_27834_length_264_cov_2.753927_g27808_i0 PRJNA1143173 27834 264 2.753927 7.27036728 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 278 3.65e-70   NTclustered gi|2874253978|emb|OY970303.1| 412054 g27808 i0 86.747 81.3674242424242 249 33 94 0 1 249 1306947 1306699 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 21481 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
23238398 23238398 PRJNA1143173_P_NODE_16879_length_296_cov_2.524664_g16853_i0 PRJNA1143173 16879 296 2.524664 7.47300544 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 158 5.66e-34   NTclustered gi|2874253789|emb|OY969773.1| 412054 g16853 i0 76.825 3.19256756756757 315 51 99 17 2 296 72321 72633 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 945 158 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27038766 27038766 PRJNA1143173_P_NODE_33062_length_249_cov_3.017045_g33036_i0 PRJNA1143173 33062 249 3.017045 7.51244205 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 50.4 7.26e-5   NR HKG91865.1 2026741 g33036 i0 49.1 0.686746987951807 57 22 68.7 1 77 247 153 202 HKG91865.1 histidine kinase [Gemmatimonadaceae bacterium] diamond 171 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27375860 27375860 PRJNA1143173_P_NODE_43243_length_207_cov_4.634328_g43217_i0 PRJNA1143173 43243 207 4.634328 9.59305896 FCB group 1783270 Bacteria Bacteria 58.2 8.49e-8   NR MEX2282481.1 2026742 g43217 i0 45.6 2.97101449275362 68 37 98.6 0 205 2 1711 1778 MEX2282481.1 fibronectin type III domain-containing protein [Gemmatimonadota bacterium] diamond 615 58.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27481207 27481207 PRJNA1143173_P_NODE_19423_length_289_cov_1.013889_g19397_i0 PRJNA1143173 19423 289 1.013889 2.93013921 Longimicrobiales bacterium 2910168 Bacteria Bacteria 85.9 4.58e-17   NR HSJ32505.1 2910168 g19397 i0 42.1 0.986159169550173 95 46 98.6 1 2 286 751 836 HSJ32505.1 BTAD domain-containing putative transcriptional regulator [Longimicrobiales bacterium] diamond 285 85.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
27544405 27544405 PRJNA1143173_P_NODE_30064_length_257_cov_7.945652_g30038_i0 PRJNA1143173 30064 257 7.945652 20.42032564 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 77.4 2.79e-14   NR HEX9165666.1 2448054 g30038 i0 58.1 0.863813229571984 74 31 86.4 0 12 233 544 617 HEX9165666.1 TonB-dependent receptor [Gemmatimonadales bacterium] diamond 222 77.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28112570 28112570 PRJNA1143173_P_NODE_12145_length_309_cov_7.639831_g12119_i0 PRJNA1143173 12145 309 7.639831 23.60707779 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 53.1 1.54e-5   NR HVZ47848.1 2026741 g12119 i0 51.1 0.456310679611651 47 21 45.6 1 168 308 75 119 HVZ47848.1 amidohydrolase family protein [Gemmatimonadaceae bacterium] diamond 141 53.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28175681 28175681 PRJNA1143173_P_NODE_36566_length_238_cov_8.442424_g36540_i0 PRJNA1143173 36566 238 8.442424 20.09296912 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 57.8 1.09e-8   NR MBE85155.1 2026742 g36540 i0 41.5 3 82 40 97.1 2 3 233 13 91 MBE85155.1 hypothetical protein [Gemmatimonadota bacterium] diamond 714 57.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28207232 28207232 PRJNA1143173_P_NODE_13166_length_299_cov_8.601770_g13140_i0 PRJNA1143173 13166 299 8.60177 25.7192923 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 56.6 8.5e-7   NR HUO52139.1 2026741 g13140 i0 30.5 1.51505016722408 151 49 96.3 3 289 2 43 192 HUO52139.1 metallophosphoesterase [Gemmatimonadaceae bacterium] diamond 453 56.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28428549 28428549 PRJNA1143173_P_NODE_35386_length_242_cov_5.153846_g35360_i0 PRJNA1143173 35386 242 5.153846 12.47230732 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 153 1.79e-45   NR HAC08013.1 2026742 g35360 i0 100 0.991735537190083 80 0 99.2 0 1 240 74 153 HAC08013.1 hypothetical protein [Gemmatimonadota bacterium] diamond 240 153 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28744184 28744184 PRJNA1143173_P_NODE_12447_length_308_cov_2.587234_g12421_i0 PRJNA1143173 12447 308 2.587234 7.96868072 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 70.9 7.16e-12   NR MBY0491284.1 2026741 g12421 i0 72 1.94805194805195 50 14 48.7 0 150 1 28 77 MBY0491284.1 sodium-dependent bicarbonate transport family permease [Gemmatimonadaceae bacterium] diamond 600 70.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28870395 28870395 PRJNA1143173_P_NODE_27228_length_265_cov_11.223958_g27202_i0 PRJNA1143173 27228 265 11.223958 29.7434887 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 65.5 1.56e-10   NR MBK8006411.1 2026742 g27202 i0 35.6 0.984905660377358 87 56 98.5 0 262 2 6 92 MBK8006411.1 SdpI family protein [Gemmatimonadota bacterium] diamond 261 65.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29881057 29881057 PRJNA1143173_P_NODE_27431_length_265_cov_4.114583_g27405_i0 PRJNA1143173 27431 265 4.114583 10.90364495 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 67.8 7e-11   NR HEX9895641.1 2448054 g27405 i0 37.5 2.89811320754717 88 53 97.4 2 263 6 204 291 HEX9895641.1 serine hydrolase domain-containing protein [Gemmatimonadales bacterium] diamond 768 67.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30070313 30070313 PRJNA1143173_P_NODE_19232_length_289_cov_4.180556_g19206_i0 PRJNA1143173 19232 289 4.180556 12.08180684 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.4 0.0203   NR HEU4700701.1 2448054 g19206 i0 44.8 0.602076124567474 58 30 58.1 2 284 117 10 67 HEU4700701.1 hypothetical protein [Gemmatimonadales bacterium] diamond 174 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30292003 30292003 PRJNA1143173_P_NODE_31952_length_252_cov_3.932961_g31926_i0 PRJNA1143173 31952 252 3.932961 9.91106172 Longimicrobium sp. 2029185 Bacteria Bacteria 145 3.12e-40   NR WP_331021089.1 2029185 g31926 i0 73.8 2.97619047619048 84 22 100 0 1 252 90 173 WP_331021089.1 amidohydrolase family protein [Longimicrobium sp.] diamond 750 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31650483 31650483 PRJNA1143173_P_NODE_44617_length_197_cov_10.120968_g44591_i0 PRJNA1143173 44617 197 10.120968 19.93830696 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 126 1.99e-33   NR HTG49533.1 2448054 g44591 i0 100 11.8781725888325 65 0 99 0 2 196 118 182 HTG49533.1 deoxyhypusine synthase [Gemmatimonadales bacterium] diamond 2340 126 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31903653 31903653 PRJNA1143173_P_NODE_39657_length_227_cov_5.558442_g39631_i0 PRJNA1143173 39657 227 5.558442 12.61766334 Longimicrobium sp. 2029185 Bacteria Bacteria 93.6 2.8200000000000003e-22   NR HEY0154086.1 2029185 g39631 i0 64.2 1.87665198237885 67 24 88.5 0 4 204 35 101 HEY0154086.1 NUDIX domain-containing protein [Longimicrobium sp.] diamond 426 93.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31998650 31998650 PRJNA1143173_P_NODE_29018_length_260_cov_7.411765_g28992_i0 PRJNA1143173 29018 260 7.411765 19.270589 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 87.8 2.4e-18   NR MEI6739213.1 2026741 g28992 i0 84.3 0.588461538461538 51 8 58.8 0 3 155 281 331 MEI6739213.1 sodium-dependent bicarbonate transport family permease [Gemmatimonadaceae bacterium] diamond 153 87.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;