RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1143173" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1143173 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27986424 27986424 PRJNA1143173_P_NODE_39485_length_228_cov_2.916129_g39459_i0 PRJNA1143173 39485 228 2.916129 6.64877412 Polysphondylium violaceum 133409 Evosea other_Eukaryota 75.1 1.23e-13   NR KAF2076319.1 133409 g39459 i0 44.6 0.973684210526316 74 41 97.4 0 5 226 1233 1306 KAF2076319.1 hypothetical protein CYY_002375 [Polysphondylium violaceum] diamond 222 75.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
31207390 31207390 PRJNA1143173_P_NODE_18355_length_292_cov_2.543379_g18329_i0 PRJNA1143173 18355 292 2.543379 7.42666668 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 89 2.6e-18   NR PRP83066.1 1890364 g18329 i0 74 0.513698630136986 50 13 51.4 0 152 3 82 131 PRP83066.1 hypothetical protein PROFUN_09662 [Planoprotostelium fungivorum] diamond 150 89 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31355116 31355116 PRJNA1143173_P_NODE_27756_length_264_cov_4.136126_g27730_i0 PRJNA1143173 27756 264 4.136126 10.91937264 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 75.1 3.91e-15   NR YP_009557803.1 1443144 g27730 i0 66 1.26136363636364 53 18 60.2 0 161 3 11 63 YP_009557803.1 NADH dehydrogenase subunit 3 [Paravannella minima] diamond 333 75.5 0.994701986754967 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
31682076 31682076 PRJNA1143173_P_NODE_39477_length_228_cov_3.096774_g39451_i0 PRJNA1143173 39477 228 3.096774 7.06064472 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 57.4 2.14e-7   NR XP_012758806.1 1410327 g39451 i0 43.4 0.697368421052632 53 30 69.7 0 70 228 79 131 XP_012758806.1 hypothetical protein SAMD00019534_013850 [Acytostelium subglobosum LB1] diamond 159 57.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;