RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1139127" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1139127 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5388459 5388459 PRJNA1139127_P_NODE_42785_length_251_cov_1.292135_g42292_i0 PRJNA1139127 42785 251 1.292135 3.24325885 Bradybaena similaris 145626 Mollusca Mollusca 58.4 4.89e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g42292 i0 97.059 13.5378486055777 34 1 15 0 157 190 22237689 22237722 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 3398 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
6662777 6662777 PRJNA1139127_P_NODE_11046_length_637_cov_2.741135_g10582_i0 PRJNA1139127 11046 637 2.741135 17.46102995 Metazoa 33208 Mollusca Mollusca 200 3.87e-61   NR CAG2199726.1 6550 g10582 i0 73.4 23.74568288854 128 34 60.3 0 481 98 97 224 CAG2199726.1 RP-L40e [Mytilus edulis] diamond 15126 202 0.99009900990099 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis
32820041 32820041 PRJNA1139127_P_NODE_47300_length_244_cov_2.257310_g46807_i0 PRJNA1139127 47300 244 2.25731 5.5078364 Mytilus edulis 6550 Mollusca Mollusca 55.1 1.48e-6   NR CAG2187267.1 6550 g46807 i0 42.6 0.75 61 34 73.8 1 181 2 192 252 CAG2187267.1 unnamed protein product [Mytilus edulis] diamond 183 55.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus edulis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;