RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1139127" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1139127 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8685299 8685299 PRJNA1139127_P_NODE_12407_length_590_cov_4.661509_g11934_i0 PRJNA1139127 12407 590 4.661509 27.5029031 Campylobacter 194 Bacteria Bacteria 976 0   NTclustered gi|1207769201|gb|MF351714.1| 199 g11934 i0 98.043 228.523728813559 562 9 95 2 26 587 1192 1751 Campylobacter concisus strain H3O1 23S ribosomal RNA gene, partial sequence blastn 134829 976 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
13785597 13785597 PRJNA1139127_P_NODE_17091_length_474_cov_2.633416_g16603_i0 PRJNA1139127 17091 474 2.633416 12.48239184 Campylobacter 194 Bacteria Bacteria 798 0   NTclustered gi|2427060812|gb|CP115607.1| 2983836 g16603 i0 97.046 264.913502109705 474 14 100 0 1 474 468773 468300 Campylobacter sp. VBCF_01 NA2 chromosome blastn 125569 804 0.992537313432836 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. VBCF_01 NA2
13785644 13785644 PRJNA1139127_P_NODE_32971_length_299_cov_3.544248_g32478_i0 PRJNA1139127 32971 299 3.544248 10.59730152 Campylobacter 194 Bacteria Bacteria 327 4.119999999999999e-85   NTclustered gi|1883582428|gb|CP059437.1| 196 g32478 i0 87.9 229.826086956522 281 31 93 3 1 279 136160 135881 Campylobacter fetus strain CFViADRI545 chromosome, complete genome blastn 68718 327 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;