RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1139127", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 1 ✖

tax_kingdom 1

  • Bacillati · 1 ✖

bioproject 1

  • PRJNA1139127 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4112442 4112442 PRJNA1139127_P_NODE_7524_length_810_cov_1.599729_g7126_i0 PRJNA1139127 7524 810 1.599729 12.9578049 Mycoplasma feliminutum 36741 Bacteria Bacteria 1068 0   NTclustered gi|294768451|gb|GU905036.1| 36741 g7126 i0 90.488 196.925925925926 820 63 99 13 2 810 1385 570 Mycoplasma feliminutum strain ATCC 25749 23S ribosomal RNA gene, partial sequence; 23S-5S ribosomal RNA intergenic spacer, complete sequence; and 5S ribosomal RNA gene, partial sequence blastn 159510 1068 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma feliminutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;