RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1139127", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1139127 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4111990 4111990 PRJNA1139127_P_NODE_13984_length_546_cov_1.564482_g13503_i0 PRJNA1139127 13984 546 1.564482 8.54207172 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 662 0   NTclustered gi|325194231|emb|FR825088.1| 890382 g13503 i0 89.655 1.5952380952381 522 50 95 3 1 520 1531 1012 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 871 662 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
31461101 31461101 PRJNA1139127_P_NODE_41916_length_253_cov_1.011111_g41423_i0 PRJNA1139127 41916 253 1.011111 2.55811083 Globisporangium splendens 82926 SAR_Eukaryotes SAR_Eukaryotes 104 2.34e-24   NR KAF1330494.1 82926 g41423 i0 59 1.96837944664032 83 34 98.4 0 5 253 291 373 KAF1330494.1 Adenosine kinase, partial [Globisporangium splendens] diamond 498 104 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;