RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1139127", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1139127 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26658643 26658643 PRJNA1139127_P_NODE_36001_length_282_cov_1.110048_g35508_i0 PRJNA1139127 36001 282 1.110048 3.13033536 Pseudo-nitzschia multistriata 183589 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.87e-5   NR VEU37424.1 183589 g35508 i0 56.3 0.51063829787234 48 17 51.1 1 1 144 1227 1270 VEU37424.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 144 52.8 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata
30860309 30860309 PRJNA1139127_P_NODE_32974_length_299_cov_3.296460_g32481_i0 PRJNA1139127 32974 299 3.29646 9.8564154 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 49.7 2.74e-4   NR GFH58591.1 426638 g32481 i0 34.9 0.632107023411371 63 41 63.2 0 194 6 10 72 GFH58591.1 hypothetical protein CTEN210_15067 [Chaetoceros tenuissimus] diamond 189 49.7 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;