contig_metadata
12 rows where bioproject = "PRJNA1139127" and tax_clade = "Bacteria candidate phyla"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1559782 | 1559782 | PRJNA1139127_P_NODE_31042_length_312_cov_8.682008_g30550_i0 | PRJNA1139127 | 31042 | 312 | 8.682008 | 27.08786496 | Candidatus Nanogingivalaceae bacterium | 2725942 | Bacteria | Bacteria | 540 | 5.11e-149 | NTclustered | gi|2070571752|gb|CP072208.2| | 2725942 | g30550 | i0 | 100 | 67.3653846153846 | 292 | 0 | 94 | 0 | 21 | 312 | 111338 | 111629 | MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome | blastn | 21018 | 540 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Nanosyncoccalia | Candidatus Nanogingivales | Candidatus Nanogingivalaceae | Candidatus Nanogingivalaceae bacterium | |||
| 11763989 | 11763989 | PRJNA1139127_P_NODE_5830_length_936_cov_3.454229_g5472_i0 | PRJNA1139127 | 5830 | 936 | 3.454229 | 32.33158344 | Candidatus Nanogingivalaceae bacterium | 2725942 | Bacteria | Bacteria | 872 | 0 | NTclustered | gi|2070571752|gb|CP072208.2| | 2725942 | g5472 | i0 | 83.917 | 9.97863247863248 | 914 | 145 | 98 | 2 | 1 | 913 | 335967 | 336879 | MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome | blastn | 9340 | 872 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Nanosyncoccalia | Candidatus Nanogingivales | Candidatus Nanogingivalaceae | Candidatus Nanogingivalaceae bacterium | |||
| 16334746 | 16334746 | PRJNA1139127_P_NODE_50013_length_227_cov_7.129870_g49520_i0 | PRJNA1139127 | 50013 | 227 | 7.12987 | 16.1848049 | Candidatus Saccharimonadota | 95818 | Bacteria | Bacteria | 381 | 2.2699999999999995e-101 | NTclustered | gi|2070586293|gb|CP076101.2| | 1917697 | g49520 | i0 | 100 | 187.202643171806 | 206 | 0 | 91 | 0 | 22 | 227 | 115255 | 115460 | MAG: Candidatus Saccharimonas sp. isolate JCVI_32_bin.49 chromosome, complete genome | blastn | 42495 | 381 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Saccharimonadia | Candidatus Saccharimonadales | Candidatus Saccharimonadaceae | Candidatus Saccharimonas | Candidatus Saccharimonas sp. | ||
| 27670821 | 27670821 | PRJNA1139127_P_NODE_11564_length_619_cov_1.708791_g11097_i0 | PRJNA1139127 | 11564 | 619 | 1.708791 | 10.57741629 | Candidatus Saccharimonadales bacterium | 2973664 | Bacteria | Bacteria | 256 | 4.8799999999999985e-81 | NR | HSX07579.1 | 2973664 | g11097 | i0 | 74.7 | 1.64781906300485 | 170 | 43 | 82.4 | 0 | 3 | 512 | 212 | 381 | HSX07579.1 cysteine desulfurase family protein [Candidatus Saccharimonadales bacterium] | diamond | 1020 | 256 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Saccharimonadia | Candidatus Saccharimonadales | Candidatus Saccharimonadales bacterium | ||||
| 27734110 | 27734110 | PRJNA1139127_P_NODE_20044_length_424_cov_0.937322_g19553_i0 | PRJNA1139127 | 20044 | 424 | 0.937322 | 3.97424528 | Parcubacteria group bacterium Gr | 2026774 | Bacteria | Bacteria | 195 | 5.61e-59 | NR | TSC89202.1 | 2017173 | g19553 | i0 | 72.4 | 2.625 | 123 | 34 | 87 | 0 | 369 | 1 | 29 | 151 | TSC89202.1 MAG: molybdopterin and thiamine biosynthesis dinucleotide-utilizing enzyme [Parcubacteria group bacterium Gr01-1014_3] | diamond | 1113 | 195 | 1 | Bacteria | Bacteria candidate phyla | Parcubacteria group bacterium Gr01-1014_3 | |||||||
| 28428520 | 28428520 | PRJNA1139127_P_NODE_38406_length_269_cov_1.739796_g37913_i0 | PRJNA1139127 | 38406 | 269 | 1.739796 | 4.68005124 | Patescibacteria group bacterium | 2052139 | Bacteria | Bacteria | 65.9 | 3.35e-10 | NR | MEK7637872.1 | 2052139 | g37913 | i0 | 54.4 | 1.73977695167286 | 57 | 26 | 63.6 | 0 | 98 | 268 | 18 | 74 | MEK7637872.1 FtsW/RodA/SpoVE family cell cycle protein [Patescibacteria group bacterium] | diamond | 468 | 65.9 | 1 | Bacteria | Bacteria candidate phyla | Patescibacteria group bacterium | |||||||
| 28838781 | 28838781 | PRJNA1139127_P_NODE_8548_length_747_cov_2.649852_g8122_i0 | PRJNA1139127 | 8548 | 747 | 2.649852 | 19.79439444 | Candidatus Binatia bacterium | 2838779 | Bacteria | Bacteria | 146 | 1.85e-36 | NR | HKA28429.1 | 2838779 | g8122 | i0 | 41.4 | 0.795180722891566 | 198 | 101 | 76.7 | 7 | 601 | 29 | 129 | 318 | HKA28429.1 thaumatin family protein [Candidatus Binatia bacterium] | diamond | 594 | 146 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Binatota | Candidatus Binatia | Candidatus Binatia bacterium | |||||
| 29049057 | 29049057 | PRJNA1139127_P_NODE_48948_length_242_cov_0.923077_g48455_i0 | PRJNA1139127 | 48948 | 242 | 0.923077 | 2.23384634 | Bacteria | 2 | Bacteria | Bacteria | 62 | 4.09e-9 | NR | OYV63841.1 | 1970249 | g48455 | i0 | 54.8 | 1.42561983471074 | 62 | 25 | 76.9 | 1 | 212 | 27 | 1 | 59 | OYV63841.1 MAG: hypothetical protein B7X03_00170 [Parcubacteria group bacterium 21-58-10] | diamond | 345 | 62 | 1 | Bacteria | Bacteria candidate phyla | Parcubacteria group bacterium 21-58-10 | |||||||
| 29964750 | 29964750 | PRJNA1139127_P_NODE_35731_length_283_cov_1.480952_g35238_i0 | PRJNA1139127 | 35731 | 283 | 1.480952 | 4.19109416 | Bacteria | 2 | Bacteria | Bacteria | 89.4 | 9.42e-19 | NR | OGH02508.1 | 1798588 | g35238 | i0 | 60.8 | 3.11660777385159 | 74 | 29 | 78.4 | 0 | 18 | 239 | 173 | 246 | OGH02508.1 MAG: hypothetical protein A2798_02565 [Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_37_17] | diamond | 882 | 89.4 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Levyibacteriota | Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_37_17 | ||||||
| 31271138 | 31271138 | PRJNA1139127_P_NODE_48255_length_243_cov_0.917647_g47762_i0 | PRJNA1139127 | 48255 | 243 | 0.917647 | 2.22988221 | Candidatus Parcubacteria bacterium | 2762014 | Bacteria | Bacteria | 59.7 | 2.92e-8 | NR | RJQ26094.1 | 2762014 | g47762 | i0 | 58.5 | 0.506172839506173 | 41 | 17 | 50.6 | 0 | 117 | 239 | 2 | 42 | RJQ26094.1 MAG: hypothetical protein C4577_04130, partial [Candidatus Parcubacteria bacterium] | diamond | 123 | 59.7 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Parcubacteria | Candidatus Parcubacteria bacterium | ||||||
| 32093490 | 32093490 | PRJNA1139127_P_NODE_23818_length_376_cov_2.290429_g23327_i0 | PRJNA1139127 | 23818 | 376 | 2.290429 | 8.61201304 | Candidatus Microgenomates bacterium | 2093373 | Bacteria | Bacteria | 67 | 1.26e-10 | NR | RJR16228.1 | 2093373 | g23327 | i0 | 53.3 | 0.478723404255319 | 60 | 28 | 47.9 | 0 | 181 | 2 | 2 | 61 | RJR16228.1 MAG: 2'-5' RNA ligase family protein [Candidatus Microgenomates bacterium] | diamond | 180 | 67 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Microgenomatota | Candidatus Microgenomates bacterium | ||||||
| 32283674 | 32283674 | PRJNA1139127_P_NODE_28599_length_331_cov_1.209302_g28107_i0 | PRJNA1139127 | 28599 | 331 | 1.209302 | 4.00278962 | Candidatus Brennerbacteria bacterium | 2750072 | Bacteria | Bacteria | 82 | 3.36e-16 | NR | MBI2278936.1 | 2750072 | g28107 | i0 | 81.8 | 1.26888217522659 | 44 | 8 | 39.9 | 0 | 198 | 67 | 216 | 259 | MBI2278936.1 IS3 family transposase [Candidatus Brennerbacteria bacterium] | diamond | 420 | 82 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Brenneribacteriota | Candidatus Brennerbacteria bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;