RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1137393", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1137393 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14313774 14313774 PRJNA1137393_P_NODE_70812_length_162_cov_0.920354_g70296_i0 PRJNA1137393 70812 162 0.920354 1.49097348 Tobamovirus capsici 3432865 Viruses Viruses 300 4.36e-77   NTclustered gi|20177424|ref|NC_003630.1| 12239 g70296 i0 100 99.9567901234568 162 0 100 0 1 162 5744 5583 Pepper mild mottle virus, complete genome blastn 16193 300 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
21961436 21961436 PRJNA1137393_P_NODE_22758_length_194_cov_1.434483_g22242_i0 PRJNA1137393 22758 194 1.434483 2.78289702 Potexvirus flavitrifolii 3433843 Viruses Viruses 331 1.92e-86   NTclustered gi|2217161454|gb|OL584354.1| 12177 g22242 i0 97.423 10 194 5 100 0 1 194 698 505 Clover yellow mosaic virus isolate DSMZ PV-0851 genomic sequence blastn 1940 331 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus flavitrifolii
30627931 30627931 PRJNA1137393_P_NODE_10013_length_262_cov_0.887324_g9497_i0 PRJNA1137393 10013 262 0.887324 2.32478888 Ilarvirus 12316 Viruses Viruses 84.7 8.17e-17   NR QOE55592.1 2741660 g9497 i0 50 2.91984732824427 84 42 96.2 0 2 253 355 438 QOE55592.1 replicase [Macrophomina phaseolina ilar-like virus] diamond 765 84.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Ilarvirus Macrophomina phaseolina ilar-like virus
32714595 32714595 PRJNA1137393_P_NODE_6680_length_330_cov_1.110320_g6164_i0 PRJNA1137393 6680 330 1.11032 3.664056 Martellivirales 2732544 Viruses Viruses 84.3 2.74e-16   NR QZW25478.1 2872749 g6164 i0 39.3 1.96363636363636 107 65 97.3 0 330 10 157 263 QZW25478.1 replicase [Grapevine toga-like virus] diamond 648 84.3 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Togaviridae   Grapevine toga-like virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;