RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1137393" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1137393 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5387884 5387884 PRJNA1137393_P_NODE_26625_length_187_cov_1.137681_g26109_i0 PRJNA1137393 26625 187 1.137681 2.12746347 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 248 1.9e-61   NTclustered gi|470423287|ref|XM_004337534.1| 1257118 g26109 i0 90.957 1.00534759358289 188 11 99 3 3 187 1743 1927 Acanthamoeba castellanii str. Neff Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase (ACA1_164180), partial mRNA blastn 188 248 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9212665 9212665 PRJNA1137393_P_NODE_26768_length_186_cov_51.445255_g26252_i0 PRJNA1137393 26768 186 51.445255 95.6881743 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 91.6 3.37e-14   NTclustered gi|300078498|gb|GU001160.1| 5755 g26252 i0 100 17.5645161290323 49 0 26 0 1 49 5161 5209 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3267 91.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14313615 14313615 PRJNA1137393_P_NODE_2452_length_619_cov_18.405263_g1965_i0 PRJNA1137393 2452 619 18.405263 113.92857797 Mycamoeba gemmipara 1895019 Discosea other_Eukaryota 872 0   NTclustered gi|1060138309|gb|KX687875.1| 1895019 g1965 i0 92.135 65.8578352180937 623 39 100 7 1 619 457 1073 Mycamoeba gemmipara small subunit ribosomal RNA gene, partial sequence blastn 40766 872 1 Eukaryota Amoebozoa   Discosea Flabellinia     Mycamoeba Mycamoeba gemmipara
22708999 22708999 PRJNA1137393_P_NODE_8698_length_282_cov_3.120172_g8182_i0 PRJNA1137393 8698 282 3.120172 8.79888504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 207 5.25e-49   NTclustered gi|1772960585|gb|MN240294.1| 5756 g8182 i0 80.952 85.9964539007092 273 42 95 9 3 270 687 420 Acanthamoeba sp. voucher OSU-07-101 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial blastn 24251 209 0.990430622009569 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
24510586 24510586 PRJNA1137393_P_NODE_12220_length_239_cov_14.484211_g11704_i0 PRJNA1137393 12220 239 14.484211 34.61726429 Mycamoeba gemmipara 1895019 Discosea other_Eukaryota 414 2.38e-111   NTclustered gi|1060138309|gb|KX687875.1| 1895019 g11704 i0 97.908 73 239 5 100 0 1 239 1204 1442 Mycamoeba gemmipara small subunit ribosomal RNA gene, partial sequence blastn 17447 414 1 Eukaryota Amoebozoa   Discosea Flabellinia     Mycamoeba Mycamoeba gemmipara
30249255 30249255 PRJNA1137393_P_NODE_50492_length_167_cov_0.881356_g49976_i0 PRJNA1137393 50492 167 0.881356 1.47186452 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.4 0.0015   NR XP_004338155.1 1257118 g49976 i0 44.4 1.58083832335329 45 25 80.8 0 8 142 70 114 XP_004338155.1 uncharacterized protein ACA1_177500 [Acanthamoeba castellanii str. Neff] diamond 264 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;