RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1137393" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1137393 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2307332 2307332 PRJNA1137393_P_NODE_11442_length_246_cov_1.472081_g10926_i0 PRJNA1137393 11442 246 1.472081 3.62131926 Parachlamydiaceae 92713 Bacteria Bacteria 407 4.12e-109   NTclustered gi|1691252667|emb|BX908798.2| 264201 g10926 i0 96.721 111.894308943089 244 8 99 0 3 246 1252962 1253205 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 27526 407 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
2835390 2835390 PRJNA1137393_P_NODE_34943_length_174_cov_1.664000_g34427_i0 PRJNA1137393 34943 174 1.664 2.89536 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 294 2.1999999999999998e-75   NTclustered gi|2874253811|emb|OY969795.1| 464461 g34427 i0 98.214 218.896551724138 168 3 100 0 7 174 2060714 2060547 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 38088 294 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
7937876 7937876 PRJNA1137393_P_NODE_69267_length_162_cov_1.840708_g68751_i0 PRJNA1137393 69267 162 1.840708 2.98194696 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 241 2.68e-59   NTclustered gi|2874253811|emb|OY969795.1| 464461 g68751 i0 94.268 174.987654320988 157 9 97 0 6 162 654882 655038 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 28348 241 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
9212787 9212787 PRJNA1137393_P_NODE_58928_length_165_cov_0.896552_g58412_i0 PRJNA1137393 58928 165 0.896552 1.4793108 Candidatus Rhabdochlamydia oedothoracis 2720720 Bacteria Bacteria 233 4.5899999999999994e-57   NTclustered gi|2076407543|gb|CP075587.1| 2720720 g58412 i0 92.121 2.00606060606061 165 13 100 0 1 165 699643 699807 Candidatus Rhabdochlamydia oedothoracis isolate W744xW776 chromosome, complete genome blastn 331 233 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia oedothoracis
23984366 23984366 PRJNA1137393_P_NODE_23239_length_193_cov_1.263889_g22723_i0 PRJNA1137393 23239 193 1.263889 2.43930577 Candidatus Protochlamydia 282132 Bacteria Bacteria 302 1.5e-77   NTclustered gi|1691252667|emb|BX908798.2| 264201 g22723 i0 94.819 158.165803108808 193 10 100 0 1 193 1250915 1250723 Candidatus Protochlamydia amoebophila UWE25 complete genome blastn 30526 303 0.996699669966997 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
27512831 27512831 PRJNA1137393_P_NODE_61703_length_164_cov_0.904348_g61187_i0 PRJNA1137393 61703 164 0.904348 1.48313072 Candidatus Rhabdochlamydia sp. T3358 2099795 Bacteria Bacteria 115 1.1699999999999998e-31   NR VHO02025.1 2099795 g61187 i0 100 0.98780487804878 54 0 98.8 0 2 163 8 61 VHO02025.1 IS1 transposase [Candidatus Rhabdochlamydia sp. T3358] diamond 162 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia sp. T3358

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;