RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA1137393" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 20 ✖

bioproject 1

  • PRJNA1137393 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
284672 284672 PRJNA1137393_P_NODE_23141_length_193_cov_1.444444_g22625_i0 PRJNA1137393 23141 193 1.444444 2.78777692 Human papillomavirus 10566 Viruses Viruses 313 6.91e-81   NTclustered gi|1559669646|gb|MH777350.2| 10566 g22625 i0 95.855 4.04145077720207 193 8 100 0 1 193 1405 1597 MAG: Human papillomavirus isolate HPV-mSK_209, partial genome blastn 780 313 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
1559251 1559251 PRJNA1137393_P_NODE_18182_length_208_cov_2.327044_g17666_i0 PRJNA1137393 18182 208 2.327044 4.84025152 Alphapapillomavirus 2 337039 Viruses Viruses 385 1.58e-102   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g17666 i0 100 1.98076923076923 208 0 100 0 1 208 220 427 Human papillomavirus type 28, complete genome blastn 412 385 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
1559270 1559270 PRJNA1137393_P_NODE_26202_length_187_cov_3.434783_g25686_i0 PRJNA1137393 26202 187 3.434783 6.42304421 Alphapapillomavirus 2 337039 Viruses Viruses 340 3.0499999999999998e-89   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g25686 i0 99.465 12.668449197861 187 1 100 0 1 187 7893 7707 Human papillomavirus type 28, complete genome blastn 2369 340 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
1559294 1559294 PRJNA1137393_P_NODE_31262_length_179_cov_2.000000_g30746_i0 PRJNA1137393 31262 179 2 3.58 Alphapapillomavirus 2 337039 Viruses Viruses 331 1.74e-86   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g30746 i0 100 1.92737430167598 179 0 100 0 1 179 5327 5149 Human papillomavirus type 28, complete genome blastn 345 331 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
5387844 5387844 PRJNA1137393_P_NODE_10225_length_259_cov_1.709524_g9709_i0 PRJNA1137393 10225 259 1.709524 4.42766716 Alphapapillomavirus 2 337039 Viruses Viruses 479 9.13e-131   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g9709 i0 100 2.00772200772201 259 0 100 0 1 259 1444 1702 Human papillomavirus type 28, complete genome blastn 520 479 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
5387886 5387886 PRJNA1137393_P_NODE_28325_length_184_cov_1.466667_g27809_i0 PRJNA1137393 28325 184 1.466667 2.69866728 Alphapapillomavirus 2 337039 Viruses Viruses 340 2.99e-89   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g27809 i0 100 2 184 0 100 0 1 184 4970 5153 Human papillomavirus type 28, complete genome blastn 368 340 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
6134980 6134980 PRJNA1137393_P_NODE_70365_length_162_cov_0.920354_g69849_i0 PRJNA1137393 70365 162 0.920354 1.49097348 Gammapapillomavirus 325455 Viruses Viruses 300 4.36e-77   NTclustered gi|1559669523|gb|MH777364.2| 10566 g69849 i0 100 2 162 0 100 0 1 162 3081 3242 MAG: Human papillomavirus isolate HPV-mSK_225, complete genome blastn 324 300 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
6662495 6662495 PRJNA1137393_P_NODE_10926_length_251_cov_2.198020_g10410_i0 PRJNA1137393 10926 251 2.19802 5.5170302 Alphapapillomavirus 2 337039 Viruses Viruses 464 2.47e-126   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g10410 i0 100 12.5896414342629 251 0 100 0 1 251 4549 4299 Human papillomavirus type 28, complete genome blastn 3160 464 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
6662510 6662510 PRJNA1137393_P_NODE_15986_length_217_cov_2.428571_g15470_i0 PRJNA1137393 15986 217 2.428571 5.26999907 Alphapapillomavirus 2 337039 Viruses Viruses 401 1.6499999999999994e-107   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g15470 i0 100 3.90783410138249 217 0 100 0 1 217 3792 4008 Human papillomavirus type 28, complete genome blastn 848 401 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
9212829 9212829 PRJNA1137393_P_NODE_69188_length_162_cov_2.336283_g68672_i0 PRJNA1137393 69188 162 2.336283 3.78477846 Human papillomavirus 10566 Viruses Viruses 294 2.03e-75   NTclustered gi|1559669646|gb|MH777350.2| 10566 g68672 i0 99.383 1 162 1 100 0 1 162 2958 2797 MAG: Human papillomavirus isolate HPV-mSK_209, partial genome blastn 162 294 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
10488236 10488236 PRJNA1137393_P_NODE_28769_length_183_cov_2.037313_g28253_i0 PRJNA1137393 28769 183 2.037313 3.72828279 Alphapapillomavirus 2 337039 Viruses Viruses 333 4.97e-87   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g28253 i0 99.454 18.4207650273224 183 1 100 0 1 183 2556 2374 Human papillomavirus type 28, complete genome blastn 3371 333 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
13038402 13038402 PRJNA1137393_P_NODE_24051_length_191_cov_1.633803_g23535_i0 PRJNA1137393 24051 191 1.633803 3.12056373 Alphapapillomavirus 2 337039 Viruses Viruses 348 1.87e-91   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g23535 i0 99.476 1 191 1 100 0 1 191 3559 3369 Human papillomavirus type 28, complete genome blastn 191 348 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
14313732 14313732 PRJNA1137393_P_NODE_60292_length_164_cov_2.382609_g59776_i0 PRJNA1137393 60292 164 2.382609 3.90747876 Alphapapillomavirus 2 337039 Viruses Viruses 289 9.59e-74   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g59776 i0 100 3.07317073170732 156 0 95 0 9 164 997 842 Human papillomavirus type 28, complete genome blastn 504 289 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
15587697 15587697 PRJNA1137393_P_NODE_6353_length_340_cov_1.907216_g5837_i0 PRJNA1137393 6353 340 1.907216 6.4845344 Alphapapillomavirus 2 337039 Viruses Viruses 623 5.429999999999999e-174   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g5837 i0 99.706 3.95 340 1 100 0 1 340 5685 5346 Human papillomavirus type 28, complete genome blastn 1343 623 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
16861750 16861750 PRJNA1137393_P_NODE_11754_length_243_cov_1.963918_g11238_i0 PRJNA1137393 11754 243 1.963918 4.77232074 Alphapapillomavirus 2 337039 Viruses Viruses 449 6.65e-122   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g11238 i0 100 9.0082304526749 243 0 100 0 1 243 3090 2848 Human papillomavirus type 28, complete genome blastn 2189 449 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
19410584 19410584 PRJNA1137393_P_NODE_13856_length_228_cov_1.977654_g13340_i0 PRJNA1137393 13856 228 1.977654 4.50905112 Alphapapillomavirus 2 337039 Viruses Viruses 422 1.34e-113   NTclustered gi|1020202|gb|U31783.1|HPU31783 37111 g13340 i0 100 8.32894736842105 228 0 100 0 1 228 6724 6951 Human papillomavirus type 28, complete genome blastn 1899 422 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
21961608 21961608 PRJNA1137393_P_NODE_63958_length_164_cov_0.904348_g63442_i0 PRJNA1137393 63958 164 0.904348 1.48313072 Betapapillomavirus 1 337051 Viruses Viruses 303 3.42e-78   NTclustered gi|333086|gb|M22961.1|PPHDELCG 333923 g63442 i0 100 16.6341463414634 164 0 100 0 1 164 969 1132 Human papillomavirus type 5 DNA and naturally occurring deletions in the late region of the virus blastn 2728 303 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 1
28302087 28302087 PRJNA1137393_P_NODE_74926_length_154_cov_2.257143_g74410_i0 PRJNA1137393 74926 154 2.257143 3.47600022 Ambidensovirus sp. 2050976 Viruses Viruses 57 1.03e-7   NR AWV66983.1 2050976 g74410 i0 54.3 0.896103896103896 46 21 89.6 0 139 2 271 316 AWV66983.1 Non-structural ORF [Ambidensovirus sp.] diamond 138 57 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Protoambidensovirus Protoambidensovirus incertum3
29912615 29912615 PRJNA1137393_P_NODE_7371_length_311_cov_1.068702_g6855_i0 PRJNA1137393 7371 311 1.068702 3.32366322 Parvovirus panthera4442 3117168 Viruses Viruses 50.8 1.15e-4   NR DBA46932.1 3117168 g6855 i0 46.9 0.472668810289389 49 25 46.3 1 144 1 103 151 DBA46932.1 MAG TPA_asm: VP [Parvovirus panthera4442] diamond 147 50.8 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus panthera4442
31334214 31334214 PRJNA1137393_P_NODE_60576_length_164_cov_1.669565_g60060_i0 PRJNA1137393 60576 164 1.669565 2.7380866 Ambidensovirus sp. 2050976 Viruses Viruses 58.5 3.35e-8   NR AWV66983.1 2050976 g60060 i0 45.1 1.82926829268293 51 28 93.3 0 1 153 368 418 AWV66983.1 Non-structural ORF [Ambidensovirus sp.] diamond 300 58.5 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Protoambidensovirus Protoambidensovirus incertum3

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;