contig_metadata
10 rows where bioproject = "PRJNA1137393", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284654 | 284654 | PRJNA1137393_P_NODE_15241_length_221_cov_1.209302_g14725_i0 | PRJNA1137393 | 15241 | 221 | 1.209302 | 2.67255742 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 211 | 3.05e-50 | NTclustered | gi|2556916994|gb|CP129486.1| | 3034175 | g14725 | i0 | 84.163 | 7.38914027149321 | 221 | 32 | 99 | 3 | 1 | 220 | 469335 | 469553 | MAG: Bdellovibrionota bacterium isolate cMAG.10 chromosome, complete genome | blastn | 1633 | 211 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 2835369 | 2835369 | PRJNA1137393_P_NODE_28943_length_183_cov_1.537313_g28427_i0 | PRJNA1137393 | 28943 | 183 | 1.537313 | 2.81328279 | Bdellovibrio bacteriovorus | 959 | Bacteria | Bacteria | 274 | 3.06e-69 | NTclustered | gi|2800920897|gb|CP168968.1| | 959 | g28427 | i0 | 93.923 | 87.8524590163934 | 181 | 11 | 99 | 0 | 3 | 183 | 779074 | 779254 | Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome | blastn | 16077 | 274 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio bacteriovorus | ||
| 7937693 | 7937693 | PRJNA1137393_P_NODE_17387_length_211_cov_2.746914_g16871_i0 | PRJNA1137393 | 17387 | 211 | 2.746914 | 5.79598854 | Bacteriovoracaceae bacterium | 2081706 | Bacteria | Bacteria | 148 | 2.3e-31 | NTclustered | gi|2907625691|emb|OZ223251.1| | 2081706 | g16871 | i0 | 80.193 | 248.881516587678 | 207 | 33 | 96 | 8 | 3 | 205 | 90798 | 91000 | MAG: Bacteriovoracaceae bacterium isolate 56684ba0-df17-47c9-bcf5-ee076427a4fa genome assembly, chromosome: 1 | blastn | 52514 | 148 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovoracaceae bacterium | |||
| 10488263 | 10488263 | PRJNA1137393_P_NODE_38729_length_169_cov_6.075000_g38213_i0 | PRJNA1137393 | 38729 | 169 | 6.075 | 10.26675 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 178 | 2.23e-40 | NTclustered | gi|2556916994|gb|CP129486.1| | 3034175 | g38213 | i0 | 86.145 | 118.934911242604 | 166 | 21 | 98 | 2 | 4 | 168 | 467075 | 467239 | MAG: Bdellovibrionota bacterium isolate cMAG.10 chromosome, complete genome | blastn | 20100 | 178 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 10488326 | 10488326 | PRJNA1137393_P_NODE_55849_length_165_cov_2.750000_g55333_i0 | PRJNA1137393 | 55849 | 165 | 2.75 | 4.5375 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 182 | 1.6899999999999996e-41 | NTclustered | gi|2893356065|emb|OZ220488.1| | 2053517 | g55333 | i0 | 91.603 | 297.854545454545 | 131 | 11 | 79 | 0 | 18 | 148 | 728670 | 728800 | MAG: Bdellovibrionales bacterium isolate 0d1acec5-ee6a-42a0-9e8e-8bc2840f726d genome assembly, chromosome: 1 | blastn | 49146 | 182 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 16861867 | 16861867 | PRJNA1137393_P_NODE_51694_length_166_cov_1.752137_g51178_i0 | PRJNA1137393 | 51694 | 166 | 1.752137 | 2.90854742 | Pseudobdellovibrionaceae bacterium | 2026715 | Bacteria | Bacteria | 109 | 3.5300000000000003e-26 | NR | MBX3018825.1 | 2026715 | g51178 | i0 | 81.5 | 0.975903614457831 | 54 | 10 | 97.6 | 0 | 165 | 4 | 461 | 514 | MBX3018825.1 FAD-dependent oxidoreductase [Pseudobdellovibrionaceae bacterium] | diamond | 162 | 109 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrionaceae bacterium | |||
| 21961662 | 21961662 | PRJNA1137393_P_NODE_9278_length_272_cov_2.443946_g8762_i0 | PRJNA1137393 | 9278 | 272 | 2.443946 | 6.64753312 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 274 | 4.889999999999998e-69 | NTclustered | gi|2556916994|gb|CP129486.1| | 3034175 | g8762 | i0 | 85.036 | 213.805147058824 | 274 | 35 | 99 | 5 | 1 | 270 | 469435 | 469164 | MAG: Bdellovibrionota bacterium isolate cMAG.10 chromosome, complete genome | blastn | 58155 | 274 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 28175642 | 28175642 | PRJNA1137393_P_NODE_69486_length_162_cov_1.672566_g68970_i0 | PRJNA1137393 | 69486 | 162 | 1.672566 | 2.70955692 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 99 | 4.02e-24 | NR | WP_321399668.1 | 28202 | g68970 | i0 | 84.9 | 0.981481481481482 | 53 | 8 | 98.1 | 0 | 160 | 2 | 36 | 88 | WP_321399668.1 lysophospholipid acyltransferase family protein [Peredibacter starrii] | diamond | 159 | 99 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 28933659 | 28933659 | PRJNA1137393_P_NODE_67808_length_163_cov_0.912281_g67292_i0 | PRJNA1137393 | 67808 | 163 | 0.912281 | 1.48701803 | Pseudobdellovibrio sp. | 2862747 | Bacteria | Bacteria | 83.2 | 2.21e-17 | NR | MEQ1723686.1 | 2862747 | g67292 | i0 | 67.9 | 0.975460122699387 | 53 | 17 | 97.5 | 0 | 1 | 159 | 190 | 242 | MEQ1723686.1 hypothetical protein [Pseudobdellovibrio sp.] | diamond | 159 | 83.2 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio sp. | ||
| 31840252 | 31840252 | PRJNA1137393_P_NODE_41957_length_169_cov_0.866667_g41441_i0 | PRJNA1137393 | 41957 | 169 | 0.866667 | 1.46466723 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 89.4 | 5.24e-19 | NR | MBS1961671.1 | 2053517 | g41441 | i0 | 87.5 | 0.85207100591716 | 48 | 6 | 85.2 | 0 | 169 | 26 | 566 | 613 | MBS1961671.1 ABC transporter ATP-binding protein [Bdellovibrionales bacterium] | diamond | 144 | 89.4 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;