RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1137393", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1137393 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4860089 4860089 PRJNA1137393_P_NODE_11264_length_248_cov_1.206030_g10748_i0 PRJNA1137393 11264 248 1.20603 2.9909544 Fusobacterium 848 Bacteria Bacteria 411 3.2099999999999995e-110   NTclustered gi|2705042081|gb|CP085192.1| 856 g10748 i0 96.748 497.95564516129 246 8 99 0 1 246 337377 337622 Fusobacterium varium strain SB069 chromosome blastn 123493 411 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
11763344 11763344 PRJNA1137393_P_NODE_30250_length_181_cov_1.363636_g29734_i0 PRJNA1137393 30250 181 1.363636 2.46818116 Fusobacterium polymorphum 76857 Bacteria Bacteria 324 2.95e-84   NTclustered gi|2645882547|gb|CP141278.1| 76857 g29734 i0 98.895 47.5082872928177 181 2 100 0 1 181 1899751 1899931 Fusobacterium polymorphum strain 149A chromosome, complete genome blastn 8599 324 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
16861862 16861862 PRJNA1137393_P_NODE_50674_length_167_cov_0.881356_g50158_i0 PRJNA1137393 50674 167 0.881356 1.47186452 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 309 7.53e-80   NTclustered gi|2704959642|gb|CP077196.1| 2663009 g50158 i0 100 42.4910179640719 167 0 100 0 1 167 2239552 2239386 Fusobacterium pseudoperiodonticum strain SB039 chromosome, complete genome blastn 7096 309 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
18136480 18136480 PRJNA1137393_P_NODE_49775_length_167_cov_0.881356_g49259_i0 PRJNA1137393 49775 167 0.881356 1.47186452 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 215 1.69e-51   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g49259 i0 90.683 1.2874251497006 161 15 96 0 4 164 1125755 1125915 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 215 215 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;