RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1137393", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 1 ✖

tax_kingdom 1

  • Fungi · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1137393 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835352 2835352 PRJNA1137393_P_NODE_2483_length_614_cov_29.325664_g1996_i0 PRJNA1137393 2483 614 29.325664 180.05957696 Physoderma maydis 276838 Fungi Fungi 265 7.179999999999999e-66   NTclustered gi|311235628|ref|NG_027645.1| 276838 g1996 i0 79.695 34.114006514658 394 59 64 12 14 405 1735 2109 Physoderma maydis DUKE DUH0007932 28S rRNA gene, partial sequence; from reference material blastn 20946 265 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma maydis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;