RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1137393" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 3 ✖

bioproject 1

  • PRJNA1137393 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
284672 284672 PRJNA1137393_P_NODE_23141_length_193_cov_1.444444_g22625_i0 PRJNA1137393 23141 193 1.444444 2.78777692 Human papillomavirus 10566 Viruses Viruses 313 6.91e-81   NTclustered gi|1559669646|gb|MH777350.2| 10566 g22625 i0 95.855 4.04145077720207 193 8 100 0 1 193 1405 1597 MAG: Human papillomavirus isolate HPV-mSK_209, partial genome blastn 780 313 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
6134980 6134980 PRJNA1137393_P_NODE_70365_length_162_cov_0.920354_g69849_i0 PRJNA1137393 70365 162 0.920354 1.49097348 Gammapapillomavirus 325455 Viruses Viruses 300 4.36e-77   NTclustered gi|1559669523|gb|MH777364.2| 10566 g69849 i0 100 2 162 0 100 0 1 162 3081 3242 MAG: Human papillomavirus isolate HPV-mSK_225, complete genome blastn 324 300 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
9212829 9212829 PRJNA1137393_P_NODE_69188_length_162_cov_2.336283_g68672_i0 PRJNA1137393 69188 162 2.336283 3.78477846 Human papillomavirus 10566 Viruses Viruses 294 2.03e-75   NTclustered gi|1559669646|gb|MH777350.2| 10566 g68672 i0 99.383 1 162 1 100 0 1 162 2958 2797 MAG: Human papillomavirus isolate HPV-mSK_209, partial genome blastn 162 294 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;