RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA1137393", tax_clade = "Discoba" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 10 ✖

tax_clade 1

  • Discoba · 10 ✖

bioproject 1

  • PRJNA1137393 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835330 2835330 PRJNA1137393_P_NODE_16423_length_215_cov_1.572289_g15907_i0 PRJNA1137393 16423 215 1.572289 3.38042135 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 174 3.88e-39   NTclustered gi|501673477|ref|NC_021128.1| 221724 g15907 i0 84.239 200.618604651163 184 23 84 5 36 215 1956 1775 Seculamonas ecuadoriensis strain ATCC 50688 mitochondrion, complete genome blastn 43133 174 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
4860110 4860110 PRJNA1137393_P_NODE_2384_length_630_cov_8.120482_g1901_i0 PRJNA1137393 2384 630 8.120482 51.1590366 Vrihiamoeba 864186 Heterolobosea other_Eukaryota 972 0   NTclustered gi|254587473|dbj|AB513360.1| 660567 g1901 i0 94.462 42.5904761904762 632 33 100 1 1 630 1769 1138 Vrihiamoeba italica gene for small subunit ribosomal RNA, partial sequence blastn 26832 981 0.990825688073395 Eukaryota Discoba   Heterolobosea     Gruberellidae Vrihiamoeba Vrihiamoeba italica
7937855 7937855 PRJNA1137393_P_NODE_65147_length_163_cov_1.421053_g64631_i0 PRJNA1137393 65147 163 1.421053 2.31631639 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 82.4 1.73e-11   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g64631 i0 93.103 19.0674846625767 58 0 34 4 75 129 3777 3833 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3108 82.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
10488361 10488361 PRJNA1137393_P_NODE_62609_length_164_cov_0.904348_g62093_i0 PRJNA1137393 62609 164 0.904348 1.48313072 Phacus pleuronectes 102908 Euglenozoa other_Eukaryota 52.8 0.014   NTclustered gi|1526689943|ref|NC_039927.1| 102908 g62093 i0 100 0.170731707317073 28 0 17 0 60 87 70173 70200 Phacus pleuronectes voucher SAG 1261-3b chloroplast, complete genome blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Phacaceae Phacus Phacus pleuronectes
10488402 10488402 PRJNA1137393_P_NODE_769_length_1178_cov_3.970771_g499_i0 PRJNA1137393 769 1178 3.970771 46.77568238 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 231 1.4399999999999996e-55   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g499 i0 76.852 15.6646859083192 432 87 44 10 750 1174 2725 3150 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18453 231 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
11763381 11763381 PRJNA1137393_P_NODE_41230_length_169_cov_0.866667_g40714_i0 PRJNA1137393 41230 169 0.866667 1.46466723 Parabodo caudatus 351713 Euglenozoa other_Eukaryota 150 4.86e-32   NTclustered gi|677286266|gb|KF997854.1| 351713 g40714 i0 93.137 70.7988165680473 102 7 60 0 1 102 1092 991 Parabodo caudatus translation elongation factor 1-alpha (EF1A) mRNA, partial cds blastn 11965 150 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Parabodonida   Parabodo Parabodo caudatus
21961443 21961443 PRJNA1137393_P_NODE_2438_length_622_cov_6.137871_g1951_i0 PRJNA1137393 2438 622 6.137871 38.17755762 Heterolobosea sp. HGG1 1237086 Heterolobosea other_Eukaryota 922 0   NTclustered gi|407750695|gb|JX441981.1| 1237086 g1951 i0 93.548 53.4871382636656 620 39 99 1 1 619 12 631 Heterolobosea sp. HGG1 18S ribosomal RNA gene, partial sequence blastn 33269 922 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. HGG1
23236994 23236994 PRJNA1137393_P_NODE_2999_length_549_cov_4.378000_g2493_i0 PRJNA1137393 2999 549 4.378 24.03522 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 712 0   NTclustered gi|1059971678|gb|KT892700.1| 1892890 g2493 i0 92.698 45.6193078324226 493 36 90 0 1 493 1071 579 Heterolobosea sp. strain B1 18S ribosomal RNA gene, partial sequence blastn 25045 712 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
23236999 23236999 PRJNA1137393_P_NODE_3279_length_520_cov_6.197452_g2770_i0 PRJNA1137393 3279 520 6.197452 32.2267504 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 274 9.99e-69   NTclustered gi|2618963742|gb|OR769034.1| 5762 g2770 i0 76.667 62.6634615384615 540 98 100 20 1 520 5326 4795 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 32585 274 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24510631 24510631 PRJNA1137393_P_NODE_28360_length_184_cov_1.400000_g27844_i0 PRJNA1137393 28360 184 1.4 2.576 Jakoba bahamiensis 221721 Root_unresolved Root_unresolved 58.4 3.37e-4   NTclustered gi|501595162|ref|NC_021126.1| 221721 g27844 i0 100 0.331521739130435 31 0 17 0 23 53 52344 52314 Jakoba bahamiensis strain ATCC 50695 mitochondrion, complete genome blastn 61 58.4 1 Eukaryota Discoba       Jakobida Jakobidae Jakoba Jakoba bahamiensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;