RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1136957" and tax_phylum = "Onychophora"

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tax_superkingdom 1

tax_phylum 1

  • Onychophora · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1136957 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13038330 13038330 PRJNA1136957_S_NODE_4571_length_366_cov_3.921824_g4474_i0 PRJNA1136957 4571 366 3.921824 14.35387584 Ruhbergia bifalcata 49095 Onychophora other_Eukaryota 52.8 0.035   NTclustered gi|13446985|gb|AF338013.1|AF338013 49095 g4474 i0 100 0.0765027322404372 28 0 8 0 1 28 303 276 Ruhbergia bifalcata 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Onychophora Udeonychophora Euonychophora Peripatopsidae Ruhbergia Ruhbergia bifalcata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;