RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1136957", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1136957 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1559139 1559139 PRJNA1136957_S_NODE_1102_length_561_cov_4.733068_g1013_i0 PRJNA1136957 1102 561 4.733068 26.55251148 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 89.7 2.25e-18   NR MBM4380033.1 2026735 g1013 i0 70.7 1.7807486631016 58 17 31 0 553 380 160 217 MBM4380033.1 peptide-methionine (S)-S-oxide reductase MsrA [Deltaproteobacteria bacterium] diamond 999 89.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
6662459 6662459 PRJNA1136957_S_NODE_4106_length_380_cov_4.604361_g4009_i0 PRJNA1136957 4106 380 4.604361 17.4965718 Haliangium ochraceum 80816 Bacteria Bacteria 54.7 0.01   NTclustered gi|262076673|gb|CP001804.1| 502025 g4009 i0 100 0.0763157894736842 29 0 8 0 266 294 6416830 6416802 Haliangium ochraceum DSM 14365, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
30512678 30512678 PRJNA1136957_S_NODE_2393_length_451_cov_7.869898_g2296_i0 PRJNA1136957 2393 451 7.869898 35.49323998 Polyangiales bacterium 3034171 Bacteria Bacteria 45.4 0.0338   NR MFO0606297.1 3034171 g2296 i0 33.8 0.452328159645233 68 38 43.9 2 268 71 381 443 MFO0606297.1 hypothetical protein [Polyangiales bacterium] diamond 204 45.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
31903599 31903599 PRJNA1136957_S_NODE_1597_length_507_cov_8.129464_g1502_i0 PRJNA1136957 1597 507 8.129464 41.21638248 Myxococcaceae bacterium 2484252 Bacteria Bacteria 114 4.34e-27   NR RYZ16148.1 2484252 g1502 i0 60.8 0.467455621301775 79 31 46.7 0 1 237 246 324 RYZ16148.1 MAG: glycoside hydrolase, partial [Myxococcaceae bacterium] diamond 237 114 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
31998614 31998614 PRJNA1136957_S_NODE_4138_length_379_cov_2.690625_g4041_i0 PRJNA1136957 4138 379 2.690625 10.19746875 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47 0.00585   NR MBK6530230.1 2026735 g4041 i0 35.4 0.514511873350924 65 38 51.5 2 196 2 1542 1602 MBK6530230.1 discoidin domain-containing protein [Deltaproteobacteria bacterium] diamond 195 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32882827 32882827 PRJNA1136957_S_NODE_21380_length_188_cov_2.775194_g21283_i0 PRJNA1136957 21380 188 2.775194 5.21736472 Myxococcaceae bacterium 2484252 Bacteria Bacteria 42.4 0.00741   NR MCI0570280.1 2484252 g21283 i0 70.4 0.430851063829787 27 8 43.1 0 1 81 78 104 MCI0570280.1 short-chain dehydrogenase [Myxococcaceae bacterium] diamond 81 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;