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contig_metadata

22 rows where bioproject = "PRJNA1136957" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 22 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1136957 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1559141 1559141 PRJNA1136957_S_NODE_11362_length_254_cov_1.410256_g11265_i0 PRJNA1136957 11362 254 1.410256 3.58205024 Nocardioides scoriae 642780 Bacteria Bacteria 100 8.12e-17   NTclustered gi|1085860874|emb|LT629757.1| 642780 g11265 i0 96.667 0.47244094488189 60 2 24 0 40 99 2658689 2658748 Marmoricola scoriae strain DSM 22127 genome assembly, chromosome: I blastn 120 100 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides scoriae
1559164 1559164 PRJNA1136957_S_NODE_15462_length_221_cov_1.759259_g15365_i0 PRJNA1136957 15462 221 1.759259 3.88796239 Actinomyces wuliandei 2057743 Bacteria Bacteria 58.4 4.21e-4   NTclustered gi|1552076344|gb|CP025227.1| 2057743 g15365 i0 90.909 0.199095022624434 44 2 19 2 174 216 2740185 2740227 Actinomyces wuliandei strain 299 chromosome, complete genome blastn 44 58.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces wuliandei
2835300 2835300 PRJNA1136957_S_NODE_8483_length_289_cov_1.326087_g8386_i0 PRJNA1136957 8483 289 1.326087 3.83239143 Agrococcus sp. SL85 2995141 Bacteria Bacteria 54.7 0.007   NTclustered gi|2381128626|gb|CP113066.1| 2995141 g8386 i0 100 0.100346020761246 29 0 10 0 171 199 1718431 1718403 Agrococcus sp. SL85 chromosome blastn 29 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agrococcus Agrococcus sp. SL85
5387778 5387778 PRJNA1136957_S_NODE_17985_length_205_cov_1.671233_g17888_i0 PRJNA1136957 17985 205 1.671233 3.42602765 Miltoncostaea marina 2843215 Bacteria Bacteria 215 2.16e-51   NTclustered gi|2030071733|gb|CP064655.1| 2843215 g17888 i0 86.07 20.7853658536585 201 26 98 2 1 200 1293900 1294099 Miltoncostaea marina strain SCSIO 60955 chromosome, complete genome blastn 4261 215 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Miltoncostaeales Miltoncostaeaceae Miltoncostaea Miltoncostaea marina
6662385 6662385 PRJNA1136957_S_NODE_10166_length_267_cov_2.639423_g10069_i0 PRJNA1136957 10166 267 2.639423 7.04725941 Micromonospora sp. NBC_01813 2975988 Bacteria Bacteria 56.5 0.002   NTclustered gi|2651870791|gb|CP109067.1| 2975988 g10069 i0 100 0.112359550561798 30 0 11 0 85 114 6185696 6185725 Micromonospora sp. NBC_01813 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. NBC_01813
11235368 11235368 PRJNA1136957_S_NODE_8649_length_287_cov_0.885965_g8552_i0 PRJNA1136957 8649 287 0.885965 2.54271955 Arthrobacter 1663 Bacteria Bacteria 470 6.18e-128   NTclustered gi|2921126289|gb|CP102608.1| 619291 g8552 i0 96.167 224.073170731707 287 11 100 0 1 287 460417 460131 Arthrobacter sp. N1 chromosome, complete genome blastn 64309 470 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. N1
12510753 12510753 PRJNA1136957_S_NODE_9310_length_278_cov_1.566210_g9213_i0 PRJNA1136957 9310 278 1.56621 4.3540638 Micrococcus 1269 Bacteria Bacteria 514 2.7199999999999996e-141   NTclustered gi|1949953231|gb|CP066288.1| 1270 g9213 i0 100 283.712230215827 278 0 100 0 1 278 2260522 2260799 Micrococcus luteus strain FDAARGOS_1034 chromosome blastn 78872 514 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Micrococcus Micrococcus luteus
13038292 13038292 PRJNA1136957_S_NODE_16211_length_216_cov_2.331210_g16114_i0 PRJNA1136957 16211 216 2.33121 5.0354136 Clavibacter capsici 1874630 Bacteria Bacteria 54.7 0.005   NTclustered gi|1826985222|gb|CP048045.1| 1874630 g16114 i0 94.444 0.944444444444444 36 0 17 2 102 137 366925 366892 Clavibacter capsici strain 1207 chromosome, complete genome blastn 204 54.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Clavibacter Clavibacter capsici
15587468 15587468 PRJNA1136957_S_NODE_17193_length_210_cov_1.615894_g17096_i0 PRJNA1136957 17193 210 1.615894 3.3933774 Microbacterium sp. PM5 2014534 Bacteria Bacteria 289 1.29e-73   NTclustered gi|1419380645|gb|CP022162.1| 2014534 g17096 i0 91.429 7.35238095238095 210 18 100 0 1 210 173850 174059 Microbacterium sp. PM5 genome blastn 1544 289 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. PM5
16334419 16334419 PRJNA1136957_S_NODE_13213_length_237_cov_1.758427_g13116_i0 PRJNA1136957 13213 237 1.758427 4.16747199 root 1 Root_unresolved Root_unresolved 438 1.4e-118   NTclustered gi|2660106423|gb|CP138905.1| 1831 g13116 i0 100 407.04641350211 237 0 100 0 1 237 559849 560085 MAG: Rhodococcus sp. (in: high G+C Gram-positive bacteria) isolate 1088c chromosome blastn 96470 438 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. (in: high G+C Gram-positive bacteria)
19410508 19410508 PRJNA1136957_S_NODE_17056_length_211_cov_1.203947_g16959_i0 PRJNA1136957 17056 211 1.203947 2.54032817 uncultured Actinomycetes bacterium 152507 Bacteria Bacteria 56.5 0.001   NTclustered gi|2874254042|emb|OY970366.1| 152507 g16959 i0 100 0.14218009478673 30 0 14 0 34 63 193999 194028 MAG: uncultured Actinomycetes bacterium isolate MFD02923.bin.c.1 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes       uncultured Actinomycetes bacterium
21433920 21433920 PRJNA1136957_S_NODE_5097_length_352_cov_1.402730_g5000_i0 PRJNA1136957 5097 352 1.40273 4.9376096 Cutibacterium 1912216 Bacteria Bacteria 651 0   NTclustered gi|2548746222|gb|CP129004.1| 1747 g5000 i0 100 285.159090909091 352 0 100 0 1 352 608943 608592 Cutibacterium acnes strain EASDk81B chromosome, complete genome blastn 100376 651 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
21961341 21961341 PRJNA1136957_S_NODE_15958_length_218_cov_1.534591_g15861_i0 PRJNA1136957 15958 218 1.534591 3.34540838 Amycolatopsis bartoniae 941986 Bacteria Bacteria 75 4.11e-9   NTclustered gi|2884838259|gb|CP174150.1| 941986 g15861 i0 88.889 1.05045871559633 63 4 28 3 131 190 2931098 2931160 Amycolatopsis bartoniae strain DSM 45807 chromosome, complete genome blastn 229 75 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis bartoniae
22708892 22708892 PRJNA1136957_S_NODE_4738_length_361_cov_4.860927_g4641_i0 PRJNA1136957 4738 361 4.860927 17.54794647 Bacillati 1783272 Bacteria Bacteria 52.8 0.034   NTclustered gi|2657055515|gb|CP108334.1| 1961 g4641 i0 100 0.473684210526316 28 0 8 0 278 305 3284904 3284931 Streptomyces virginiae strain NBC_00131 chromosome, complete genome blastn 171 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces virginiae
23236905 23236905 PRJNA1136957_S_NODE_3839_length_389_cov_2.754545_g3742_i0 PRJNA1136957 3839 389 2.754545 10.71518005 Nocardioides ochotonae 2685869 Bacteria Bacteria 52.8 0.037   NTclustered gi|1910930591|gb|CP061769.1| 2685869 g3742 i0 96.875 0.0822622107969152 32 0 8 1 266 297 379040 379010 Nocardioides ochotonae strain ZJ1313 chromosome, complete genome blastn 32 52.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides ochotonae
23984329 23984329 PRJNA1136957_S_NODE_16359_length_215_cov_2.737179_g16262_i0 PRJNA1136957 16359 215 2.737179 5.88493485 Streptomyces 1883 Bacteria Bacteria 119 1.84e-22   NTclustered gi|2667573168|gb|CP107811.1| 2975770 g16262 i0 84.426 62.1162790697674 122 17 56 2 9 129 3117344 3117224 Streptomyces sp. NBC_00539 chromosome, complete genome blastn 13355 119 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_00539
25258313 25258313 PRJNA1136957_S_NODE_12080_length_247_cov_1.888298_g11983_i0 PRJNA1136957 12080 247 1.888298 4.66409606 Cutibacterium 1912216 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1446500593|gb|CP031442.1| 1747 g11983 i0 100 268.141700404858 247 0 100 0 1 247 56944 56698 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 66231 457 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
26721759 26721759 PRJNA1136957_S_NODE_15341_length_222_cov_1.460123_g15244_i0 PRJNA1136957 15341 222 1.460123 3.24147306 unclassified Streptomyces 2593676 Bacteria Bacteria 43.1 0.02   NR WP_241842784.1 2593676 g15244 i0 46.9 0.662162162162162 49 24 63.5 1 199 59 26 74 WP_241842784.1 MULTISPECIES: hypothetical protein [unclassified Streptomyces] diamond 147 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
29438374 29438374 PRJNA1136957_S_NODE_20350_length_195_cov_0.897059_g20253_i0 PRJNA1136957 20350 195 0.897059 1.74926505 Kitasatospora indigofera 67307 Bacteria Bacteria 44.7 0.0042   NR WP_355657059.1 67307 g20253 i0 33.3 0.969230769230769 63 41 96.9 1 7 195 49 110 WP_355657059.1 acyl-CoA thioesterase/bile acid-CoA:amino acid N-acyltransferase family protein [Kitasatospora indigofera] diamond 189 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora indigofera
29881018 29881018 PRJNA1136957_S_NODE_2671_length_436_cov_2.442971_g2574_i0 PRJNA1136957 2671 436 2.442971 10.65135356 Streptomyces sp. Rer75 2750011 Bacteria Bacteria 43.5 0.0313   NR QLH27388.1 2750011 g2574 i0 42.1 0.784403669724771 57 31 37.8 1 281 117 53 109 QLH27388.1 MFS transporter [Streptomyces sp. Rer75] diamond 342 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. Rer75
31418225 31418225 PRJNA1136957_S_NODE_13516_length_235_cov_1.039773_g13419_i0 PRJNA1136957 13516 235 1.039773 2.44346655 Streptomyces 1883 Bacteria Bacteria 80.5 1.72e-15   NR WP_250402383.1 67285 g13419 i0 52.9 5.47659574468085 70 33 89.4 0 1 210 628 697 WP_250402383.1 neutral/alkaline ceramidase [Streptomyces cellostaticus] diamond 1287 81.3 0.990159901599016 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces cellostaticus
31461085 31461085 PRJNA1136957_S_NODE_8916_length_283_cov_1.691964_g8819_i0 PRJNA1136957 8916 283 1.691964 4.78825812 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 62.8 1.72e-9   NR MET0160153.1 2201156 g8819 i0 56.5 0.657243816254417 62 20 65.7 1 282 97 129 183 MET0160153.1 oligoribonuclease [Acidimicrobiales bacterium] diamond 186 62.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;