RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1136957" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 4 ✖

bioproject 1

  • PRJNA1136957 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2307313 2307313 PRJNA1136957_S_NODE_11282_length_255_cov_1.091837_g11185_i0 PRJNA1136957 11282 255 1.091837 2.78418435 Gammaretrovirus 153135 Viruses Viruses 377 3.37e-100   NTclustered gi|509019|gb|M59898.1|MCFENVBE 11785 g11185 i0 96.491 123.019607843137 228 8 89 0 1 228 477 250 Mink cell focus-forming virus proviral long terminal repeat, clone TE3/3 blastn 31370 377 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15587465 15587465 PRJNA1136957_S_NODE_16973_length_211_cov_2.427632_g16876_i0 PRJNA1136957 16973 211 2.427632 5.12230352 Lentivirus humimdef1 3418650 Viruses Viruses 52.8 0.019   NTclustered gi|306477570|gb|HM990251.1| 11676 g16876 i0 100 1.06161137440758 28 0 13 0 50 77 2451 2478 HIV-1 isolate pt_12 clone 17 from Italy pol protein (pol) gene, partial cds blastn 224 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
27512816 27512816 PRJNA1136957_S_NODE_1703_length_498_cov_6.223235_g1607_i0 PRJNA1136957 1703 498 6.223235 30.9917103 Gammaretrovirus murleu 3428959 Viruses Viruses 336 1.39e-111   NR 8WUS_E 11801 g1607 i0 99.4 7.95180722891566 165 1 99.4 0 497 3 136 300 8WUS_E Chain E, Gag-Pol polyprotein [Moloney murine leukemia virus] diamond 3960 336 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31808786 31808786 PRJNA1136957_S_NODE_457_length_728_cov_4.113602_g393_i0 PRJNA1136957 457 728 4.113602 29.94702256 Moloney murine leukemia virus 11801 Viruses Viruses 459 9.519999999999999e-147   NR NP_057933.2 11801 g393 i0 97.5 0.976648351648352 237 6 97.7 0 725 15 1094 1330 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 711 459 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;