RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1136957", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1136957 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29269769 29269769 PRJNA1136957_S_NODE_18529_length_202_cov_1.706294_g18432_i0 PRJNA1136957 18529 202 1.706294 3.44671388 Fungi 4751 Fungi Fungi 51.6 1.63e-5   NR TPX69135.1 117820 g18432 i0 80.6 2.24257425742574 36 4 53.5 2 2 109 521 553 TPX69135.1 hypothetical protein SpCBS45565_g02677 [Spizellomyces sp. 'palustris'] diamond 453 52 0.992307692307692 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp. 'palustris'
29280734 29280734 PRJNA1136957_S_NODE_12829_length_240_cov_5.359116_g12732_i0 PRJNA1136957 12829 240 5.359116 12.8618784 Piromyces sp. E2 73868 Fungi Fungi 43.9 0.0135   NR OUM61917.1 73868 g12732 i0 50 0.5 40 20 50 0 121 240 208 247 OUM61917.1 hypothetical protein PIROE2DRAFT_11930 [Piromyces sp. E2] diamond 120 43.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp. E2
30070281 30070281 PRJNA1136957_S_NODE_2472_length_446_cov_13.509044_g2375_i0 PRJNA1136957 2472 446 13.509044 60.25033624 Neocallimastix lanati (nom. inval.) 2767002 Fungi Fungi 91.3 1.85e-19   NR KAG4085517.1 2767002 g2375 i0 54.5 2.46860986547085 123 53 81.4 2 82 444 1 122 KAG4085517.1 eukaryotic translation elongation factor 1 beta [Neocallimastix lanati (nom. inval.)] diamond 1101 91.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix lanati (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;