RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1136957", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA1136957 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15587453 15587453 PRJNA1136957_S_NODE_14293_length_229_cov_1.076471_g14196_i0 PRJNA1136957 14293 229 1.076471 2.46511859 Mycoplasma ovis 171632 Bacteria Bacteria 132 2.55e-26   NTclustered gi|566058721|gb|CP006935.1| 1415773 g14196 i0 80.952 0.733624454148472 168 31 73 1 1 167 200005 200172 Mycoplasma ovis str. Michigan, complete genome blastn 168 132 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma ovis
16861681 16861681 PRJNA1136957_S_NODE_17054_length_211_cov_1.203947_g16957_i0 PRJNA1136957 17054 211 1.203947 2.54032817 Mycoplasma wenyonii 65123 Bacteria Bacteria 150 6.389999999999998e-32   NTclustered gi|395455868|gb|CP003703.1| 1197325 g16957 i0 83.537 0.777251184834123 164 23 77 4 35 196 99414 99253 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 164 150 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
19410494 19410494 PRJNA1136957_S_NODE_14556_length_227_cov_1.452381_g14459_i0 PRJNA1136957 14556 227 1.452381 3.29690487 Mycoplasma wenyonii 65123 Bacteria Bacteria 230 8.699999999999997e-56   NTclustered gi|395455868|gb|CP003703.1| 1197325 g14459 i0 84.956 0.995594713656388 226 34 99 0 2 227 649918 649693 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 226 230 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
26849038 26849038 PRJNA1136957_S_NODE_10201_length_267_cov_1.461538_g10104_i0 PRJNA1136957 10201 267 1.461538 3.90230646 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 73.6 2.07e-14   NR WP_187150461.1 432608 g10104 i0 97.2 0.404494382022472 36 1 40.4 0 168 61 91 126 WP_187150461.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 108 73.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
29691004 29691004 PRJNA1136957_S_NODE_10310_length_266_cov_1.178744_g10213_i0 PRJNA1136957 10310 266 1.178744 3.13545904 Candidatus Mycoplasma haematobovis 432608 Bacteria Bacteria 122 6.66e-30   NR WP_187150616.1 432608 g10213 i0 75 0.992481203007519 88 22 99.2 0 1 264 192 279 WP_187150616.1 hypothetical protein [Candidatus Mycoplasma haematobovis] diamond 264 122 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematobovis
31808783 31808783 PRJNA1136957_S_NODE_20877_length_193_cov_0.910448_g20780_i0 PRJNA1136957 20877 193 0.910448 1.75716464 Mycoplasma wenyonii 65123 Bacteria Bacteria 125 3.5799999999999997e-32   NR WP_258393867.1 65123 g20780 i0 92.2 1.98963730569948 64 5 99.5 0 2 193 111 174 WP_258393867.1 phospholipase D-like domain-containing protein [Mycoplasma wenyonii] diamond 384 125 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;