RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1136957" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1136957 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2835264 2835264 PRJNA1136957_S_NODE_21463_length_187_cov_3.570312_g21366_i0 PRJNA1136957 21463 187 3.570312 6.67648344 Chloroidium ellipsoideum 63676 Plants Plants 224 3.21e-54   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g21366 i0 88.235 99.8395721925134 187 22 100 0 1 187 2338 2524 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 18670 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
4860068 4860068 PRJNA1136957_S_NODE_14004_length_231_cov_1.284884_g13907_i0 PRJNA1136957 14004 231 1.284884 2.96808204 Ostreobium 121087 Plants Plants 58.4 4.44e-4   NTclustered gi|1075059554|ref|NC_030629.1| 121088 g13907 i0 97.143 0.303030303030303 35 0 15 1 94 128 61550 61583 Ostreobium quekettii genome assembly, organelle: plastid blastn 70 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
20685965 20685965 PRJNA1136957_S_NODE_13617_length_234_cov_1.531429_g13520_i0 PRJNA1136957 13617 234 1.531429 3.58354386 Diplosphaera sundellii 3135960 Plants Plants 202 1.9699999999999998e-47   NTclustered gi|2878821371|gb|PQ563290.1| 3135960 g13520 i0 89.873 44.042735042735 158 15 97 1 1 157 9287 9130 Diplosphaera sundellii mitochondrion, complete genome blastn 10306 202 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sundellii
27659848 27659848 PRJNA1136957_S_NODE_12744_length_241_cov_2.010989_g12647_i0 PRJNA1136957 12744 241 2.010989 4.84648349 Eukaryota 2759 Plants Plants 48.9 1.53e-4   NR KAG2483284.1 47281 g12647 i0 50.9 1.3195020746888 53 25 64.7 1 241 86 149 201 KAG2483284.1 hypothetical protein HYH03_017831 [Edaphochlamys debaryana] diamond 318 48.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana
28870353 28870353 PRJNA1136957_S_NODE_828_length_602_cov_25.974217_g750_i0 PRJNA1136957 828 602 25.974217 156.36478634 [Myrmecia] bisecta 41462 Plants Plants 171 2.99e-51   NR KAK9808902.1 41462 g750 i0 81.3 1.43521594684385 96 18 47.8 0 602 315 13 108 KAK9808902.1 hypothetical protein WJX72_006080 [[Myrmecia] bisecta] diamond 864 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
32505039 32505039 PRJNA1136957_S_NODE_19779_length_197_cov_1.326087_g19682_i0 PRJNA1136957 19779 197 1.326087 2.61239139 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 70.5 8.4e-13   NR KAG7673070.1 1650286 g19682 i0 86.8 0.578680203045685 38 5 57.9 0 197 84 184 221 KAG7673070.1 hypothetical protein KSW81_006286 [Chlorella desiccata (nom. nud.)] diamond 114 70.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
32757041 32757041 PRJNA1136957_S_NODE_11860_length_249_cov_1.926316_g11763_i0 PRJNA1136957 11860 249 1.926316 4.79652684 Chlamydomonas incerta 51695 Plants Plants 55.1 1.91e-6   NR KAG2425500.1 51695 g11763 i0 42.3 1.55421686746988 78 40 94 2 234 1 1727 1799 KAG2425500.1 hypothetical protein HXX76_013709 [Chlamydomonas incerta] diamond 387 55.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;