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contig_metadata

4 rows where bioproject = "PRJNA1136957", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1136957 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17609662 17609662 PRJNA1136957_S_NODE_10074_length_268_cov_9.875598_g9977_i0 PRJNA1136957 10074 268 9.875598 26.46660264 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89.8 1.87e-13   NTclustered gi|695389557|ref|XM_009521174.1| 67593 g9977 i0 92.063 27.9776119402985 63 5 24 0 1 63 857 919 Phytophthora sojae hypothetical protein partial mRNA blastn 7498 89.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
19410561 19410561 PRJNA1136957_S_NODE_7016_length_312_cov_12.984190_g6919_i0 PRJNA1136957 7016 312 12.98419 40.5106728 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 106 2.21e-18   NTclustered gi|2795040101|ref|XM_067937224.1| 4785 g6919 i0 92 29.2692307692308 75 6 24 0 236 310 918 844 Phytophthora cinnamomi Polyubiquitin (IUM83_12589), partial mRNA blastn 9132 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
20686044 20686044 PRJNA1136957_S_NODE_8737_length_285_cov_7.265487_g8640_i0 PRJNA1136957 8737 285 7.265487 20.70663795 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 139 1.96e-28   NTclustered gi|675167000|ref|XM_008894137.1| 761204 g8640 i0 82.209 52.0771929824561 163 27 57 2 11 172 228 389 Phytophthora parasitica INRA-310 histone H4 mRNA blastn 14842 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
28238722 28238722 PRJNA1136957_S_NODE_1266_length_539_cov_37.085417_g1174_i0 PRJNA1136957 1266 539 37.085417 199.89039763 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 70.5 1.27e-10   NR DAZ95331.1 4803 g1174 i0 50.7 2.2987012987013 69 26 34 1 476 294 6 74 DAZ95331.1 TPA: hypothetical protein N0F65_002438 [Lagenidium giganteum] diamond 1239 70.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;