RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1136957" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA1136957 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6662480 6662480 PRJNA1136957_S_NODE_8766_length_285_cov_2.159292_g8669_i0 PRJNA1136957 8766 285 2.159292 6.1539822 Opitutus sp. GAS368 1882749 Bacteria Bacteria 490 4.71e-134   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g8669 i0 97.88 132.421052631579 283 6 99 0 3 285 2834660 2834942 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 37740 490 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
7937592 7937592 PRJNA1136957_S_NODE_11847_length_249_cov_2.247368_g11750_i0 PRJNA1136957 11847 249 2.247368 5.59594632 Actomonas aquatica 2866162 Bacteria Bacteria 52.8 0.023   NTclustered gi|2647674565|gb|CP139781.1| 2866162 g11750 i0 100 0.112449799196787 28 0 11 0 222 249 11647 11674 Actomonas aquatica strain WL0086 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
14313493 14313493 PRJNA1136957_S_NODE_11852_length_249_cov_2.021053_g11755_i0 PRJNA1136957 11852 249 2.021053 5.03242197 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 337 5.559999999999998e-88   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g11755 i0 91.129 91.1967871485944 248 22 99 0 1 248 1874047 1873800 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 22708 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
27986374 27986374 PRJNA1136957_S_NODE_19985_length_196_cov_1.781022_g19888_i0 PRJNA1136957 19985 196 1.781022 3.49080312 Lacunisphaera sp. 1961806 Bacteria Bacteria 70.5 3.21e-12   NR MSU46754.1 1961806 g19888 i0 76.2 0.642857142857143 42 10 64.3 0 128 3 1 42 MSU46754.1 cytochrome c oxidase subunit I [Lacunisphaera sp.] diamond 126 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
29881012 29881012 PRJNA1136957_S_NODE_16851_length_212_cov_1.908497_g16754_i0 PRJNA1136957 16851 212 1.908497 4.04601364 Opitutia bacterium 2026771 Bacteria Bacteria 82.4 2.17e-16   NR MBI3885947.1 2026771 g16754 i0 100 0.509433962264151 36 0 50.9 0 210 103 391 426 MBI3885947.1 multicopper oxidase domain-containing protein [Opitutia bacterium] diamond 108 82.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
31081539 31081539 PRJNA1136957_S_NODE_17195_length_210_cov_1.615894_g17098_i0 PRJNA1136957 17195 210 1.615894 3.3933774 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.5 0.0126   NR RLS39950.1 2026780 g17098 i0 34.3 1 70 39 90 3 13 201 14 83 RLS39950.1 MAG: alpha/beta hydrolase [Planctomycetota bacterium] diamond 210 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31587523 31587523 PRJNA1136957_S_NODE_7996_length_296_cov_1.286920_g7899_i0 PRJNA1136957 7996 296 1.28692 3.8092832 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 42.7 0.0263   NR HQP91129.1 2035772 g7899 i0 87 0.233108108108108 23 3 23.3 0 2 70 110 132 HQP91129.1 30S ribosomal protein S9 [Candidatus Omnitrophota bacterium] diamond 69 42.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;