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contig_metadata

21 rows where bioproject = "PRJNA1136505" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 21 ✖

tax_clade 1

bioproject 1

  • PRJNA1136505 · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
284522 284522 PRJNA1136505_P_NODE_71101_length_349_cov_4.485507_g64241_i0 PRJNA1136505 71101 349 4.485507 15.65441943 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 601 2.6099999999999998e-167   NTclustered gi|909719645|gb|KT185625.1| 5778 g64241 i0 97.708 23.8739255014327 349 8 100 0 1 349 7094 6746 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 8332 601 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1559104 1559104 PRJNA1136505_P_NODE_51742_length_432_cov_1.487465_g44883_i0 PRJNA1136505 51742 432 1.487465 6.4258488 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 632 1.1699999999999996e-176   NTclustered gi|146335208|gb|EF216680.1| 5778 g44883 i0 93.056 1 432 30 100 0 1 432 791 360 Hartmannella vermiformis transketolase mRNA, complete cds blastn 432 632 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2835198 2835198 PRJNA1136505_P_NODE_55343_length_411_cov_2.671598_g48483_i0 PRJNA1136505 55343 411 2.671598 10.98026778 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 721 0   NTclustered gi|421976335|gb|JQ519484.1| 5778 g48483 i0 98.297 88.5815085158151 411 7 100 0 1 411 421 11 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 36407 721 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3582500 3582500 PRJNA1136505_P_NODE_156823_length_236_cov_5.312883_g149963_i0 PRJNA1136505 156823 236 5.312883 12.53840388 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 436 4.999999999999999e-118   NTclustered gi|399764177|gb|JQ271688.1| 5778 g149963 i0 100 100 236 0 100 0 1 236 392 157 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 23600 436 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4111477 4111477 PRJNA1136505_P_NODE_104704_length_282_cov_1.459330_g97844_i0 PRJNA1136505 104704 282 1.45933 4.1153106 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 337 6.41e-88   NTclustered gi|146335208|gb|EF216680.1| 5778 g97844 i0 88.968 0.99645390070922 281 20 99 11 1 278 1888 2160 Hartmannella vermiformis transketolase mRNA, complete cds blastn 281 337 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5387736 5387736 PRJNA1136505_P_NODE_73325_length_343_cov_2.270370_g66465_i0 PRJNA1136505 73325 343 2.2703700000000002 7.7873691 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 357 6.14e-94   NTclustered gi|421976335|gb|JQ519484.1| 5778 g66465 i0 98.515 56.533527696793 202 3 59 0 142 343 927 726 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 19391 357 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5387737 5387737 PRJNA1136505_P_NODE_79225_length_328_cov_2.568627_g72365_i0 PRJNA1136505 79225 328 2.568627 8.42509656 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 595 1.1399999999999998e-165   NTclustered gi|300078496|gb|GU001158.1| 5778 g72365 i0 99.39 29.0396341463415 328 2 100 0 1 328 1217 1544 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9525 595 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6662371 6662371 PRJNA1136505_P_NODE_67686_length_360_cov_1.958188_g60826_i0 PRJNA1136505 67686 360 1.958188 7.0494768 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 403 8.179999999999998e-108   NTclustered gi|88601207|gb|DQ384272.1| 5778 g60826 i0 95.276 0.705555555555556 254 12 71 0 13 266 272 19 Hartmannella vermiformis unknown mRNA blastn 254 403 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7409903 7409903 PRJNA1136505_P_NODE_127426_length_254_cov_1.220994_g120566_i0 PRJNA1136505 127426 254 1.220994 3.10132476 Vermamoeba 1260114 Tubulinea other_Eukaryota 453 5.41e-123   NTclustered gi|909719645|gb|KT185625.1| 5778 g120566 i0 98.819 21.1496062992126 254 3 100 0 1 254 4166 4419 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 5372 453 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9212513 9212513 PRJNA1136505_P_NODE_29848_length_708_cov_2.080315_g23125_i0 PRJNA1136505 29848 708 2.080315 14.7286302 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 627 9.239999999999997e-175   NTclustered gi|89357437|gb|DQ407656.1| 5778 g23125 i0 94.161 1.16101694915254 411 24 58 0 191 601 411 1 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 822 627 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14313457 14313457 PRJNA1136505_P_NODE_51752_length_432_cov_1.395543_g44893_i0 PRJNA1136505 51752 432 1.395543 6.02874576 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 556 7.25e-154   NTclustered gi|88601165|gb|DQ384330.1| 5778 g44893 i0 91.379 1.87962962962963 406 35 94 0 1 406 255 660 Hartmannella vermiformis succinyl-diaminopimelate desuccinylase-like protein B mRNA, partial cds blastn 812 556 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15587403 15587403 PRJNA1136505_P_NODE_34453_length_610_cov_3.039106_g27649_i0 PRJNA1136505 34453 610 3.039106 18.5385466 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 900 0   NTclustered gi|66270666|gb|AY950658.1| 5778 g27649 i0 93.813 20.4344262295082 598 37 98 0 13 610 1128 531 Hartmannella vermiformis Nop58p mRNA, partial cds blastn 12465 900 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15587416 15587416 PRJNA1136505_P_NODE_65853_length_367_cov_1.108844_g58993_i0 PRJNA1136505 65853 367 1.108844 4.06945748 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 617 2.74e-172   NTclustered gi|421976335|gb|JQ519484.1| 5778 g58993 i0 97.003 64.4986376021798 367 11 100 0 1 367 399 765 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 23671 617 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15587424 15587424 PRJNA1136505_P_NODE_82493_length_321_cov_1.479839_g75633_i0 PRJNA1136505 82493 321 1.479839 4.75028319 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 438 1.9799999999999993e-118   NTclustered gi|146335208|gb|EF216680.1| 5778 g75633 i0 91.772 0.984423676012461 316 24 98 2 1 315 1637 1951 Hartmannella vermiformis transketolase mRNA, complete cds blastn 316 438 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16861648 16861648 PRJNA1136505_P_NODE_92274_length_301_cov_1.495614_g85414_i0 PRJNA1136505 92274 301 1.495614 4.50179814 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 407 5.19e-109   NTclustered gi|88601123|gb|DQ390348.1| 5778 g85414 i0 91.809 0.973421926910299 293 22 97 2 1 292 71 362 Hartmannella vermiformis lactate dehydrogenase-like protein mRNA, partial cds blastn 293 407 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18136253 18136253 PRJNA1136505_P_NODE_8835_length_2616_cov_2.909162_g6186_i0 PRJNA1136505 8835 2616 2.909162 76.10367792 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1256 0   NTclustered gi|421976355|gb|JQ519494.1| 5778 g6186 i0 95.214 61.2675840978593 794 38 30 0 1373 2166 794 1 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 160276 1256 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21961278 21961278 PRJNA1136505_P_NODE_25438_length_847_cov_4.157623_g18955_i0 PRJNA1136505 25438 847 4.157623 35.21506681 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1286 0   NTclustered gi|62910949|gb|AY925001.1| 5778 g18955 i0 96.415 3.68831168831169 781 27 92 1 67 847 1 780 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 3124 1286 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23984315 23984315 PRJNA1136505_P_NODE_26299_length_814_cov_9.219973_g19746_i0 PRJNA1136505 26299 814 9.219973 75.05058022 Vermamoeba 1260114 Tubulinea other_Eukaryota 1443 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g19746 i0 98.649 49.5835380835381 814 11 100 0 1 814 5763 4950 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 40361 1443 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27765528 27765528 PRJNA1136505_P_NODE_80624_length_325_cov_1.527778_g73764_i0 PRJNA1136505 80624 325 1.527778 4.9652785 Amoeba proteus 5775 Tubulinea other_Eukaryota 118 3.32e-28   NR AKN09691.1 5775 g73764 i0 49.1 0.978461538461538 106 54 97.8 0 5 322 477 582 AKN09691.1 Tom70 [Amoeba proteus] diamond 318 118 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28238716 28238716 PRJNA1136505_P_NODE_71706_length_348_cov_1.254545_g64846_i0 PRJNA1136505 71706 348 1.254545 4.3658166 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 147 8.179999999999999e-43   NR ABD72565.1 5778 g64846 i0 67.7 0.827586206896552 96 31 82.8 0 290 3 1 96 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 288 147 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31366146 31366146 PRJNA1136505_P_NODE_27556_length_773_cov_1.860000_g20938_i0 PRJNA1136505 27556 773 1.86 14.3778 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 127 3.75e-33   NR ABD72565.1 5778 g20938 i0 49.3 0.520051746442432 134 63 50.1 2 58 444 2 135 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 402 127 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;