RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1136505" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1136505 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7937564 7937564 PRJNA1136505_P_NODE_69067_length_356_cov_1.017668_g62207_i0 PRJNA1136505 69067 356 1.017668 3.62289808 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 147 3.83e-39   NR MDE3002550.1 2026742 g62207 i0 62.5 10.314606741573 112 41 94.4 1 354 19 92 202 MDE3002550.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadota bacterium] diamond 3672 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
14313435 14313435 PRJNA1136505_P_NODE_154132_length_241_cov_1.464286_g147272_i0 PRJNA1136505 154132 241 1.464286 3.52892926 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 195 3.41e-45   NTclustered gi|2874253755|emb|OY969695.1| 412054 g147272 i0 84.974 4.58921161825726 193 28 80 1 4 195 254134 254326 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 1106 195 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27038714 27038714 PRJNA1136505_P_NODE_150422_length_243_cov_0.905882_g143562_i0 PRJNA1136505 150422 243 0.905882 2.20129326 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 152 2.79e-41   NR HUQ81531.1 2026741 g143562 i0 88.6 1.96296296296296 79 9 97.5 0 242 6 269 347 HUQ81531.1 M14 family metallopeptidase [Gemmatimonadaceae bacterium] diamond 477 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27670793 27670793 PRJNA1136505_P_NODE_116364_length_267_cov_1.587629_g109504_i0 PRJNA1136505 116364 267 1.587629 4.23896943 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 119 1.6799999999999999e-29   NR MBC8088729.1 2026741 g109504 i0 76.4 2 89 20 100 1 267 1 311 398 MBC8088729.1 ammonium transporter [Gemmatimonadaceae bacterium] diamond 534 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27797083 27797083 PRJNA1136505_P_NODE_77184_length_334_cov_0.911877_g70324_i0 PRJNA1136505 77184 334 0.911877 3.04566918 Longimicrobium sp. 2029185 Bacteria Bacteria 84.7 1.74e-16   NR HEX8361268.1 2029185 g70324 i0 45 0.979041916167665 109 58 96.1 1 13 333 90 198 HEX8361268.1 TULIP family P47-like protein [Longimicrobium sp.] diamond 327 84.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28491612 28491612 PRJNA1136505_P_NODE_109787_length_275_cov_2.351485_g102927_i0 PRJNA1136505 109787 275 2.351485 6.46658375 Longimicrobium sp. 2029185 Bacteria Bacteria 52 2.62e-5   NR HEU4456664.1 2029185 g102927 i0 36.4 0.96 88 21 96 1 268 5 82 134 HEU4456664.1 glycerophosphodiester phosphodiesterase [Longimicrobium sp.] diamond 264 52 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29565000 29565000 PRJNA1136505_P_NODE_156610_length_238_cov_2.212121_g149750_i0 PRJNA1136505 156610 238 2.212121 5.26484798 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 85.5 2.75e-17   NR MFL5511656.1 2448054 g149750 i0 56.3 1.00840336134454 80 33 99.6 2 2 238 374 452 MFL5511656.1 cytochrome P450 [Gemmatimonadales bacterium] diamond 240 85.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32145884 32145884 PRJNA1136505_P_NODE_89318_length_307_cov_1.047009_g82458_i0 PRJNA1136505 89318 307 1.047009 3.21431763 root 1 Root_unresolved Root_unresolved 75.5 1.48e-13   NR WP_026848531.1 1379270 g82458 i0 36.5 3.77198697068404 96 61 93.8 0 1 288 215 310 WP_026848531.1 zinc-dependent alcohol dehydrogenase family protein [Gemmatimonas phototrophica] diamond 1158 75.9 0.994729907773386 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;